Screening and Validation of Key Genes of Autophagy in Acute Myocardial Infarction Based on Bioinformatics

被引:1
作者
Geng, Yingjie [1 ]
Han, Yu'e [2 ]
Wang, Shujuan [1 ]
Qi, Jia [1 ]
Bi, Xiaoli [3 ,4 ]
机构
[1] Zibo Cent Hosp, Dept Cardiol, Zibo, Shandong, Peoples R China
[2] Zibo Cent Hosp, Dept Pulm & Crit Care Med, Zibo, Shandong, Peoples R China
[3] Zibo First Hosp, Dept Cardiol, Zibo, Shandong, Peoples R China
[4] Zibo First Hosp, Dept Cardiol, 4 Emeishan East Rd, Zibo 255200, Shandong, Peoples R China
来源
EVOLUTIONARY BIOINFORMATICS | 2024年 / 20卷
关键词
Acute myocardial infarction; autophagy; bioinformatics; key genes; IDENTIFICATION; INJURY;
D O I
10.1177/11769343241227331
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Aims: Autophagy plays a significant role in the development of acute myocardial infarction (AMI), and cardiomyocyte autophagy is of major importance in maintaining cardiac function. We aimed to identify key genes associated with autophagy in AMI through bioinformatics analysis and verify them through clinical validation.Materials and Methods: We downloaded an AMI expression profile dataset GSE166780 from Gene Expression Omnibus (GEO). Autophagy-associated genes potentially differentially expressed in AMI were screened using R software. Then, to identify key autophagy-related genes, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis, protein-protein interaction (PPI) analysis, Receiver Operating Characteristic (ROC) curve analysis, and correlation analysis were performed on the differentially expressed autophagy-related genes in AMI. Finally, we used quantificational real-time polymerase chain reaction (qRT-PCR) to verify the RNA expression of the screened key genes.Results: TSC2, HSPA8, and HIF1A were screened out as key autophagy-related genes. qRT-PCR results showed that the expression levels of HSPA8 and TSC2 in AMI blood samples were lower, while the expression level of HIF1A was higher than that in the healthy controls.Conclusions: TSC2, HSPA8, and HIF1A were identified as key autophagy-related genes in this study. They may influence the development of AMI through autophagy. These findings may help deepen our understanding of AMI and may be useful for the treatment of AMI.
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页数:9
相关论文
共 46 条
  • [1] Acute Myocardial Infarction
    Anderson, Jeffrey L.
    Morrow, David A.
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 2017, 376 (21) : 2053 - 2064
  • [2] Mitochondrial chaperones in human health and disease
    Bahr, Tyler
    Katuri, Joshua
    Liang, Ting
    Bai, Yidong
    [J]. FREE RADICAL BIOLOGY AND MEDICINE, 2022, 179 : 363 - 374
  • [3] Bai WW., 2021, Oxid Med Cell Longev, V2021, P12
  • [4] Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis
    Bustin, SA
    Mueller, R
    [J]. CLINICAL SCIENCE, 2005, 109 (04) : 365 - 379
  • [5] Chen DQ., 2019, Cardiovasc Ther, V2019, P13
  • [6] Prediction and analysis of essential genes using the enrichments of gene ontology and KEGG pathways
    Chen, Lei
    Zhang, Yu-Hang
    Wang, ShaoPeng
    Zhang, YunHua
    Huang, Tao
    Cai, Yu-Dong
    [J]. PLOS ONE, 2017, 12 (09):
  • [7] Collet JP, 2021, REV ESP CARDIOL, V74, DOI [10.1016/j.rec.2021.05.002, 10.1093/eurheartj/ehaa575]
  • [8] Heat Shock Proteins: Connectors between Heart and Kidney
    Cruz Junho, Carolina Victoria
    Bueno Azevedo, Carolina Amaral
    da Cunha, Regiane Stafim
    de Yurre, Ainhoa Rodriguez
    Medei, Emiliano
    Marques Stinghen, Andrea Emilia
    Carneiro-Ramos, Marcela Sorelli
    [J]. CELLS, 2021, 10 (08)
  • [9] Molecular machinery and interplay of apoptosis and autophagy in coronary heart disease
    Dong, Yan
    Chen, Hengwen
    Gao, Jialiang
    Liu, Yongmei
    Li, Jun
    Wang, Jie
    [J]. JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY, 2019, 136 : 27 - 41
  • [10] Autophagy and Myocardial Ischemia
    Du, Jie
    Li, Yulin
    Zhao, Wei
    [J]. AUTOPHAGY: BIOLOGY AND DISEASES: CLINICAL SCIENCE, 2020, 1207 : 217 - 222