An integrated cellular and molecular model of gastric neuroendocrine cancer evolution highlights therapeutic targets

被引:20
作者
Griger, Joscha [1 ,2 ,3 ]
Widholz, Sebastian A. [1 ,2 ,3 ]
Jesinghaus, Moritz [4 ,6 ,7 ,13 ]
Kraetzig, Niklas de Andrade [1 ,2 ,3 ]
Lange, Sebastian [1 ,2 ,5 ]
Engleitner, Thomas [1 ,2 ]
Montero, Juan Jose [1 ,2 ]
Zhigalova, Ekaterina [1 ,2 ]
Oellinger, Rupert [1 ,2 ]
Suresh, Veveeyan [1 ,2 ]
Winkler, Wiebke [8 ]
Lier, Svenja [5 ]
Baranov, Olga [1 ,2 ]
Trozzo, Riccardo [1 ]
Ben Khaled, Najib [1 ,2 ,14 ]
Chakraborty, Shounak [4 ]
Yu, Jiakun [2 ]
Konukiewitz, Bjoern [4 ,9 ]
Steiger, Katja [4 ]
Pfarr, Nicole [4 ]
Rajput, Ashish [1 ,2 ]
Sailer, David [1 ,2 ,3 ]
Keller, Gisela [4 ]
Schirmacher, Peter [10 ]
Roecken, Christoph [9 ]
Fagerstedt, Klaus W. [15 ]
Mayerle, Julia
Schmidt-Supprian, Marc [1 ,3 ,16 ]
Schneider, Guenter [5 ,12 ]
Weichert, Wilko [4 ]
Calado, Dinis P. [8 ,11 ]
Sommermann, Thomas [8 ]
Kloeppel, Gueuronter [4 ]
Rajewsky, Klaus [8 ]
Saur, Dieter [2 ,3 ,5 ,13 ]
Rad, Roland [1 ,2 ,3 ,5 ]
机构
[1] Tech Univ Munich, Inst Mol Oncol & Funct Genom, Sch Med, D-81675 Munich, Germany
[2] Tech Univ Munich, Ctr Translat Canc Res TranslaTUM, Sch Med, D-81675 Munich, Germany
[3] German Canc Consortium DKTK, D-69120 Heidelberg, Germany
[4] Tech Univ Munich, Inst Pathol, Sch Med, D-81675 Munich, Germany
[5] Tech Univ Munich, Sch Med, Dept Med 2, Klinikum rechts Isar, D-81675 Munich, Germany
[6] Philipps Univ Marburg, Inst Pathol, Marburg, Germany
[7] Univ Hosp Marburg UKGM, Marburg, Germany
[8] Max Delbruck Ctr Mol Med Helmholtz Assoc, Immune Regulat & Canc, D-13125 Berlin, Germany
[9] Univ klinikum Schleswig Holstein Campus Kiel, Inst Pathol, D-24105 Kiel, Germany
[10] Univ klinikum Heidelberg, Inst Pathol, D-69120 Heidelberg, Germany
[11] Francis Crick Inst, Immun & Canc, London NW1 1AT, England
[12] Univ Med Ctr Gottingen, Dept Gen Visceral & Pediat Surg, D-37075 Gottingen, Germany
[13] Tech Univ Munich, Inst Expt Canc Therapy, Sch Med, D-81675 Munich, Germany
[14] Ludwig Maximilians Univ Munchen, Univ Hosp, Dept Med 2, D-81377 Munich, Germany
[15] Univ Helsinki, Dept Pathol, Helsinki, Finland
[16] Tech Univ Munich, Inst Expt Hematol, Sch Med, D-81675 Munich, Germany
基金
欧洲研究理事会;
关键词
C-MYC; STEM-CELLS; B-CELLS; DATABASE; STOMACH; SWITCH; IDENTIFICATION; TRANSCRIPTS; COMBINATION; INHIBITION;
D O I
10.1016/j.ccell.2023.06.001
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Gastric neuroendocrine carcinomas (G-NEC) are aggressive malignancies with poorly understood biology and a lack of disease models. Here, we use genome sequencing to characterize the genomic landscapes of human G-NEC and its histologic variants. We identify global and subtype-specific alterations and expose hitherto unappreciated gains of MYC family members in a large part of cases. Genetic engineering and lineage tracing in mice delineate a model of G-NEC evolution, which defines MYC as a critical driver and positions the cancer cell of origin to the neuroendocrine compartment. MYC-driven tumors have pronounced metastatic competence and display defined signaling addictions, as revealed by large-scale genetic and pharmacologic screening of cell lines and organoid resources. We create global maps of G-NEC dependencies, highlight critical vulnerabilities, and validate therapeutic targets, including candidates for clinical drug repurposing. Our study gives comprehensive insights into G-NEC biology.
引用
收藏
页码:1327 / +
页数:29
相关论文
共 125 条
[61]   MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens [J].
Li, Wei ;
Xu, Han ;
Xiao, Tengfei ;
Cong, Le ;
Love, Michael I. ;
Zhang, Feng ;
Irizarry, Rafael A. ;
Liu, Jun S. ;
Brown, Myles ;
Liu, X. Shirley .
GENOME BIOLOGY, 2014, 15 (12) :554
[62]   The Molecular Signatures Database Hallmark Gene Set Collection [J].
Liberzon, Arthur ;
Birger, Chet ;
Thorvaldsdottir, Helga ;
Ghandi, Mahmoud ;
Mesirov, Jill P. ;
Tamayo, Pablo .
CELL SYSTEMS, 2015, 1 (06) :417-425
[63]   Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 [J].
Love, Michael I. ;
Huber, Wolfgang ;
Anders, Simon .
GENOME BIOLOGY, 2014, 15 (12)
[64]   Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets [J].
Macosko, Evan Z. ;
Basu, Anindita ;
Satija, Rahul ;
Nemesh, James ;
Shekhar, Karthik ;
Goldman, Melissa ;
Tirosh, Itay ;
Bialas, Allison R. ;
Kamitaki, Nolan ;
Martersteck, Emily M. ;
Trombetta, John J. ;
Weitz, David A. ;
Sanes, Joshua R. ;
Shalek, Alex K. ;
Regev, Aviv ;
McCarroll, Steven A. .
CELL, 2015, 161 (05) :1202-1214
[65]   Cancer metabolism: looking forward [J].
Martinez-Reyes, Inmaculada ;
Chandel, Navdeep S. .
NATURE REVIEWS CANCER, 2021, 21 (10) :669-680
[66]   Mechanisms of embryonic stomach development [J].
McCracken, Kyle W. ;
Wells, James M. .
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY, 2017, 66 :36-42
[67]   Second-line treatment in patients with advanced extra-pulmonary poorly differentiated neuroendocrine carcinoma: a systematic review and meta-analysis [J].
McNamara, Mairead G. ;
Frizziero, Melissa ;
Jacobs, Timothy ;
Lamarca, Angela ;
Hubner, Richard A. ;
Valle, Juan W. ;
Amir, Eitan .
THERAPEUTIC ADVANCES IN MEDICAL ONCOLOGY, 2020, 12
[68]   The pINDUCER lentiviral toolkit for inducible RNA interference in vitro and in vivo [J].
Meerbrey, Kristen L. ;
Hu, Guang ;
Kessler, Jessica D. ;
Roarty, Kevin ;
Li, Mamie Z. ;
Fang, Justin E. ;
Herschkowitz, Jason I. ;
Burrows, Anna E. ;
Ciccia, Alberto ;
Sun, Tingting ;
Schmitt, Earlene M. ;
Bernardi, Ronald J. ;
Fu, Xiaoyong ;
Bland, Christopher S. ;
Cooper, Thomas A. ;
Schiff, Rachel ;
Rosen, Jeffrey M. ;
Westbrook, Thomas F. ;
Elledge, Stephen J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (09) :3665-3670
[69]   PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees [J].
Mi, Huaiyu ;
Muruganujan, Anushya ;
Thomas, Paul D. .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D377-D386
[70]   Efficacy and safety of ramucirumab-containing chemotherapy in patients with pretreated metastatic gastric neuroendocrine carcinoma [J].
Mishima, Saori ;
Kawazoe, Akihito ;
Matsumoto, Hiroshi ;
Kuboki, Yasutoshi ;
Bando, Hideaki ;
Kojima, Takashi ;
Doi, Toshihiko ;
Ohtsu, Atsushi ;
Yoshino, Takayuki ;
Nonte, Elizabeth M. ;
Chintharlapalli, Sudhakar ;
Nasir, Aejaz ;
Kuwata, Takeshi ;
Shitara, Kohei .
ESMO OPEN, 2018, 3 (07)