Polarizable Embedding without Artificial Boundary Polarization

被引:2
作者
Kvedaraviciute, Sonata [1 ]
Carrasco-Busturia, David [1 ]
Moller, Klaus B. [1 ]
Olsen, Joïgvan Magnus Haugaard [1 ]
机构
[1] Tech Univ Denmark, DTU Chem, DK-2800 Lyngby, Denmark
关键词
RESPONSE THEORY; EXCITED-STATES; QUANTUM; QM/MM; SYSTEMS; POTENTIALS; PARAMETERS; MODEL; ENVIRONMENTS; SOLVATION;
D O I
10.1021/acs.jctc.3c00434
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present a fully self-consistent polarizable embedding(PE) modelthat does not suffer from unphysical boundary polarization. This isachieved through the use of the minimum-image convention (MIC) inthe induced electrostatics. It is a simple yet effective approachthat includes a more physically accurate description of the polarizationthroughout the molecular system. Using PE with MIC (PE-MIC), we shednew light on the limitations of commonly employed cutoff models, suchas the droplet model, when used in PE calculations. Specifically,we investigate the effects of the unphysical polarization at the outerboundary by comparing induced dipoles and the associated electrostaticpotentials, as well as some optical properties of solute-solventand biomolecular systems. We show that the magnitude of the inaccuraciescaused by the unphysical polarization depends on multiple parameters:the nature of the quantum subsystem and of the environment, the cutoffmodel and distance, and the calculated property.
引用
收藏
页码:5122 / 5141
页数:20
相关论文
共 63 条
[1]   The Dalton quantum chemistry program system [J].
Aidas, Kestutis ;
Angeli, Celestino ;
Bak, Keld L. ;
Bakken, Vebjorn ;
Bast, Radovan ;
Boman, Linus ;
Christiansen, Ove ;
Cimiraglia, Renzo ;
Coriani, Sonia ;
Dahle, Pal ;
Dalskov, Erik K. ;
Ekstrom, Ulf ;
Enevoldsen, Thomas ;
Eriksen, Janus J. ;
Ettenhuber, Patrick ;
Fernandez, Berta ;
Ferrighi, Lara ;
Fliegl, Heike ;
Frediani, Luca ;
Hald, Kasper ;
Halkier, Asger ;
Hattig, Christof ;
Heiberg, Hanne ;
Helgaker, Trygve ;
Hennum, Alf Christian ;
Hettema, Hinne ;
Hjertenaes, Eirik ;
Host, Stinne ;
Hoyvik, Ida-Marie ;
Iozzi, Maria Francesca ;
Jansik, Branislav ;
Jensen, Hans Jorgen Aa. ;
Jonsson, Dan ;
Jorgensen, Poul ;
Kauczor, Joanna ;
Kirpekar, Sheela ;
Kjrgaard, Thomas ;
Klopper, Wim ;
Knecht, Stefan ;
Kobayashi, Rika ;
Koch, Henrik ;
Kongsted, Jacob ;
Krapp, Andreas ;
Kristensen, Kasper ;
Ligabue, Andrea ;
Lutnaes, Ola B. ;
Melo, Juan I. ;
Mikkelsen, Kurt V. ;
Myhre, Rolf H. ;
Neiss, Christian .
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, 2014, 4 (03) :269-284
[2]   Averaged Solvent Embedding Potential Parameters for Multiscale Modeling of Molecular Properties [J].
Beerepoot, Maarten T. P. ;
Steindal, Arnfinn Hykkerud ;
List, Nanna Holmgaard ;
Kongsted, Jacob ;
Olsen, Jogvan Magnus Haugaard .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2016, 12 (04) :1684-1695
[3]   Convergence of environment polarization effects in multiscale modeling of excitation energies [J].
Beerepoot, Maarten T. P. ;
Steindal, Arnfinn Hykkerud ;
Ruud, Kenneth ;
Olsen, Jogvan Magnus Haugaard ;
Kongsted, Jacob .
COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2014, 1040 :304-311
[4]   A General Boundary Potential for Hybrid QM/MM Simulations of Solvated Biomolecular Systems [J].
Benighaus, Tobias ;
Thiel, Walter .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2009, 5 (11) :3114-3128
[5]   Polarizable embedding QM/MM: the future gold standard for complex (bio)systems? [J].
Bondanza, Mattia ;
Nottoli, Michele ;
Cupellini, Lorenzo ;
Lipparini, Filippo ;
Mennucci, Benedetta .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2020, 22 (26) :14433-14448
[6]   An efficient electrostatic embedding QM/MM method using periodic boundary conditions based on particle-mesh Ewald sums and electrostatic potential fitted charge operators [J].
Bonfrate, Simone ;
Ferre, Nicolas ;
Huix-Rotllant, Miquel .
JOURNAL OF CHEMICAL PHYSICS, 2023, 158 (02)
[7]   Solvent Boundary Potentials for Hybrid QM/MM Computations Using Classical Drude Oscillators: A Fully Polarizable Model [J].
Boulanger, Eliot ;
Thiel, Walter .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (11) :4527-4538
[8]   Mixed Quantum Mechanical/Molecular Mechanical Molecular Dynamics Simulations of Biological Systems in Ground and Electronically Excited States [J].
Brunk, Elizabeth ;
Rothlisberger, Ursula .
CHEMICAL REVIEWS, 2015, 115 (12) :6217-6263
[9]   Toward a Unified Modeling of Environment and Bridge-Mediated Contributions to Electronic Energy Transfer: A Fully Polarizable QM/MM/PCM Approach [J].
Caprasecca, Stefano ;
Curutchet, Carles ;
Mennucci, Benedetta .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (11) :4462-4473
[10]   Lipid14: The Amber Lipid Force Field [J].
Dickson, Callum J. ;
Madej, Benjamin D. ;
Skjevik, Age A. ;
Betz, Robin M. ;
Teigen, Knut ;
Gould, Ian R. ;
Walker, Ross C. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2014, 10 (02) :865-879