SRENet: a spatiotemporal relationship-enhanced 2D-CNN-based framework for staging and segmentation of kidney cancer using CT images

被引:5
作者
Liang, Shuang [1 ]
Gu, Yu [1 ]
机构
[1] Capital Med Univ, Sch Biomed Engn, Xitoutiao, YouAnMen, 10,Xitoutiao,YouAnMen,Fengtai Dist, Beijing 100069, Peoples R China
基金
中国国家自然科学基金;
关键词
CNN; Computed tomography2; Kidney cancer; Transformer; Tumor segmentation; OF-THE-ART;
D O I
10.1007/s10489-022-04384-5
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Kidney cancer (KC) is among the 10 most common cancers posing health threats to humans, with an average lifetime risk of 1.53%. Computed tomography (CT) is regarded as the golden standard for the characterization of KC and is widely used for KC prognosis. However, it is challenging to segment KC in CT images and perform cancer staging simultaneously due to the variable positions and shapes of kidney tumors and similar textural features in the background and target areas. We propose a novel spatiotemporal relationship-enhanced convolutional neural network (CNN)-based framework called SRENet. It consists of a spatial transformer framework and a residual U-Net with a temporal relationship extraction module for the staging and segmentation of KC. The SRENet achieves excellent performance on six evaluation metrics (Kappa, Sensitivity, Specificity, Precision, Accuracy, F1-score) for KC staging with an F1-score of 98.46%. The framework demonstrates a strong and reliable capacity for kidney and KC segmentation with Dice coefficients (DCs) of 97.89% and 92.54%, respectively, outperforming the state-of-the-art models (ResNeXt-101, ViT and Swin-Transformer for staging, and VNet, UNet 3+ and nnUNet for segmentation). The proposed SRENet helps accelerate the development of reliable kidney and KC segmentation methodologies and shows significant potential for KC diagnosis in clinical practice.
引用
收藏
页码:17061 / 17073
页数:13
相关论文
共 32 条
[1]   SLIC Superpixels Compared to State-of-the-Art Superpixel Methods [J].
Achanta, Radhakrishna ;
Shaji, Appu ;
Smith, Kevin ;
Lucchi, Aurelien ;
Fua, Pascal ;
Suesstrunk, Sabine .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2012, 34 (11) :2274-2281
[2]   Recent advances in medical image processing for the evaluation of chronic kidney disease [J].
Alnazer, Israa ;
Bourdon, Pascal ;
Urruty, Thierry ;
Falou, Omar ;
Khalil, Mohamad ;
Shahin, Ahmad ;
Fernandez-Maloigne, Christine .
MEDICAL IMAGE ANALYSIS, 2021, 69
[3]   Applications of computed tomography (CT) scanning technology in forest research: a timely update and review [J].
Beaulieu, Jean ;
Dutilleul, Pierre .
CANADIAN JOURNAL OF FOREST RESEARCH, 2019, 49 (10) :1173-1188
[4]   Ultrasound Open Platforms for Next-Generation Imaging Technique Development [J].
Boni, Enrico ;
Yu, Alfred C. H. ;
Freear, Steven ;
Jensen, Jorgen Arendt ;
Tortoli, Piero .
IEEE TRANSACTIONS ON ULTRASONICS FERROELECTRICS AND FREQUENCY CONTROL, 2018, 65 (07) :1078-1092
[5]   A review of the application of deep learning in medical image classification and segmentation [J].
Cai, Lei ;
Gao, Jingyang ;
Zhao, Di .
ANNALS OF TRANSLATIONAL MEDICINE, 2020, 8 (11)
[6]   Kidney cortex segmentation in 2D CT with U-Nets ensemble aggregation [J].
Couteaux, V ;
Si-Mohamed, S. ;
Renard-Penna, R. ;
Nempont, O. ;
Lefevre, T. ;
Popoff, A. ;
Pizaine, G. ;
Villain, N. ;
Bloch, I ;
Behr, J. ;
Bellin, M-F ;
Roy, C. ;
Rouviere, O. ;
Montagne, S. ;
Lassau, N. ;
Boussel, L. .
DIAGNOSTIC AND INTERVENTIONAL IMAGING, 2019, 100 (04) :211-217
[7]   Clinical Significance of Magnetic Resonance Imaging Markers of Vascular Brain Injury A Systematic Review and Meta-analysis [J].
Debette, Stephanie ;
Schilling, Sabrina ;
Duperron, Marie-Gabrielle ;
Larsson, Susanna C. ;
Markus, Hugh S. .
JAMA NEUROLOGY, 2019, 76 (01) :81-94
[8]  
Dosovitskiy Alexey., 2021, PROC INT C LEARN REP, P2021, DOI [10.48550/arXiv.2010.11929, DOI 10.48550/ARXIV.2010.11929]
[9]   Breathing new life into immunotherapy: review of melanoma, lung and kidney cancer [J].
Drake, Charles G. ;
Lipson, Evan J. ;
Brahmer, Julie R. .
NATURE REVIEWS CLINICAL ONCOLOGY, 2014, 11 (01) :24-37
[10]   Trends and projections of kidney cancer incidence at the global and national levels, 1990-2030: a Bayesian age-period-cohort modeling study [J].
Du, Zhebin ;
Chen, Wei ;
Xia, Qier ;
Shi, Oumin ;
Chen, Qi .
BIOMARKER RESEARCH, 2020, 8 (01)