PM2.5-related DNA methylation and the association with lung function in non-smokers

被引:6
作者
Mu, Ge [1 ,2 ]
Nie, Xiuquan [1 ]
Yang, Shijie [1 ]
Ye, Zi [1 ]
Cheng, Man [1 ]
Fan, Lieyang [1 ]
Qiu, Weihong [1 ]
Tan, Qiyou [1 ]
Zhou, Min [1 ]
Guo, Yanjun [1 ]
Chen, Weihong [1 ,3 ]
机构
[1] Huazhong Univ Sci & Technol, Tongji Med Coll, Sch Publ Hlth, Dept Occupat & Environm Hlth, Wuhan 430030, Hubei, Peoples R China
[2] Shaanxi Prov Peoples Hosp, Data Ctr, Med Affairs Dept, Xian 710068, Shaanxi, Peoples R China
[3] Huazhong Univ Sci & Technol, Tongji Med Coll, Sch Publ Hlth, Dept Occupat & Environm Hlth, 13 Hangkong Rd, Wuhan 430030, Hubei, Peoples R China
基金
中国国家自然科学基金;
关键词
DNA methylation; Infinium MethylationEPIC BeadChip; Epigenome-wide association study; Fine particulate matter; Lung function; PERSONAL PM2.5 EXPOSURE; AIR-POLLUTION; PACKAGE; PANEL;
D O I
10.1016/j.envpol.2022.120700
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
PM2.5 exposure leads to lung function alteration. The potential pathway underlying above association, especially the role of DNA methylation is unclear. The objectives of this study are to evaluate the associations of personal PM2.5 concentrations with DNA methylation at the epigenome-wide level, and investigate how PM2.5-related DNA methylation affects lung function. A total of 402 observations of non-smokers were selected from the Wuhan-Zhuhai cohort. PM2.5 exposure was estimated through a model established in the same population. Blood DNA methylation levels were determined through Illumina Infinium MethylationEPIC BeadChips. Lung function was tested through spirometry on the day of blood sampling. The associations of PM2.5 exposure with DNA methylation and DNA methylation with lung function were determined through linear mixed models. Ten PM2.5-related CpG sites (mapped to 7 different genes) were observed with false discovery rate <0.05. Methylation levels of cg24821877, cg24862131, cg23530876, cg11149743 and cg10781276 were positively associated with PM2.5 concentrations. While methylation levels of cg10314909, cg08968107, cg18362281, cg24663971 and cg17834632 were negatively associated with PM2.5 concentrations. The top CpG was cg24663971 (P = 1.51.10(-9)). Among the above 10 sites, significantly positive associations of methylation levels of cg24663971 with FVC%pred and FEV1%pred, and cg10314909 with FVC, FVC%pred, and FEV1%pred were observed. Age had modification effect on the associations between cg24663971 methylation and FVC%pred, and the associations were more obvious among participants with age >= 58 years. In conclusion, PM2.5 exposure was associated with DNA methylation, and PM2.5-related DNA methylation was associated with lung function among Wuhan urban non-smokers.
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页数:9
相关论文
共 45 条
[1]   Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays [J].
Aryee, Martin J. ;
Jaffe, Andrew E. ;
Corrada-Bravo, Hector ;
Ladd-Acosta, Christine ;
Feinberg, Andrew P. ;
Hansen, Kasper D. ;
Irizarry, Rafael A. .
BIOINFORMATICS, 2014, 30 (10) :1363-1369
[2]   Lung function discordance in monozygotic twins and associated differences in blood DNA methylation [J].
Bolund, Anneli C. S. ;
Starnawska, Anna ;
Miller, Martin R. ;
Schlunssen, Vivi ;
Backer, Vibeke ;
Borglum, Anders D. ;
Christensen, Kaare ;
Tan, Qihua ;
Christiansen, Lene ;
Sigsgaard, Torben .
CLINICAL EPIGENETICS, 2017, 9
[3]   Long-term outdoor air pollution and DNA methylation in circulating monocytes: results from the Multi-Ethnic Study of Atherosclerosis (MESA) [J].
Chi, Gloria C. ;
Liu, Yongmei ;
MacDonald, James W. ;
Barr, R. Graham ;
Donohue, Kathleen M. ;
Hensley, Mark D. ;
Hou, Lifang ;
McCall, Charles E. ;
Reynolds, Lindsay M. ;
Siscovick, David S. ;
Kaufman, Joel D. .
ENVIRONMENTAL HEALTH, 2016, 15
[4]  
Cohen AJ, 1996, CANCER RES, V56, P831
[5]   From blood to lung tissue: effect of cigarette smoke on DNA methylation and lung function [J].
de Vries, Maaike ;
van der Plaat, Diana A. ;
Nedeljkovic, Ivana ;
Verkaik-Schakel, Rikst Nynke ;
Kooistra, Wierd ;
Amin, Najaf ;
van Duijn, Cornelia M. ;
Brandsma, Corry-Anke ;
van Diemen, Cleo C. ;
Vonk, Judith M. ;
Boezen, H. Marike .
RESPIRATORY RESEARCH, 2018, 19
[6]   Air pollution, lung function and COPD: results from the population-based UK Biobank study [J].
Doiron, Dany ;
de Hoogh, Kees ;
Probst-Hensch, Nicole ;
Fortier, Isabel ;
Cai, Yutong ;
De Matteis, Sara ;
Hansell, Anna L. .
EUROPEAN RESPIRATORY JOURNAL, 2019, 54 (01)
[7]   Principles of DNA methylation and their implications for biology and medicine [J].
Dor, Yuval ;
Cedar, Howard .
LANCET, 2018, 392 (10149) :777-786
[8]   Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis [J].
Du, Pan ;
Zhang, Xiao ;
Huang, Chiang-Ching ;
Jafari, Nadereh ;
Kibbe, Warren A. ;
Hou, Lifang ;
Lin, Simon M. .
BMC BIOINFORMATICS, 2010, 11
[9]   Genome-Wide DNA Methylation in Peripheral Blood and Long-Term Exposure to Source -Specific Transportation Noise and Air Pollution: The SAPALDIA Study [J].
Eze, Ikenna C. ;
Jeong, Ayoung ;
Schaffner, Emmanuel ;
Rezwan, Faisal I. ;
Ghantous, Akram ;
Foraster, Maria ;
Vienneau, Danielle ;
Kronenberg, Florian ;
Herceg, Zdenko ;
Vineis, Paolo ;
Brink, Mark ;
Wunderli, Jean-Marc ;
Schindler, Christian ;
Cajochen, Christian ;
Roosli, Martin ;
Holloway, John W. ;
Imboden, Medea ;
Probst-Hensch, Nicole .
ENVIRONMENTAL HEALTH PERSPECTIVES, 2020, 128 (06)
[10]   Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi [J].
Fortin, Jean-Philippe ;
Triche, Timothy J., Jr. ;
Hansen, Kasper D. .
BIOINFORMATICS, 2017, 33 (04) :558-560