Genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme

被引:2
作者
Liu, Zhiye [1 ]
Li, Wei [1 ]
You, Guoliang [2 ]
Hu, Zhihong [3 ]
Liu, Yuji [2 ]
Zheng, Niandong [1 ]
机构
[1] Southwest Med Univ, Dept Neurosurg, Affiliated Hosp, Luzhou 646000, Sichuan, Peoples R China
[2] Peoples Hosp Leshan City, Dept Cerebrovasc Dis, Leshan 614000, Sichuan, Peoples R China
[3] Leshan Shizhong Dist Peoples Hosp, Dept Cerebrovasc Dis, Leshan 614000, Sichuan, Peoples R China
关键词
glioblastoma multiforme; immunogenic cell death; prognosis; immunotherapy; tumour mutation burden; CENTRAL-NERVOUS-SYSTEM; EXPRESSION; GRADE; TEMOZOLOMIDE; SURVIVAL; CLASSIFICATION; PROCARBAZINE; VINCRISTINE; MECHANISMS; MUTATION;
D O I
10.1515/med-2023-0716
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Immunogenic cell death (ICD), a unique form of cancer cell death, has therapeutic potential in anti-tumour immunotherapy. The aim of this study is to explore the predictive potential of ICD in the prognosis and immunotherapy outcomes of glioblastoma multiforme (GBM). RNA sequencing data and clinical information were downloaded from three databases. Unsupervised consistency clustering analysis was used to identify ICD-related clusters and gene clusters. Additionally, the ICD scores were determined using principal component analysis and the Boruta algorithm via dimensionality reduction techniques. Subsequently, three ICD-related clusters and three gene clusters with different prognoses were identified, with differences in specific tumour immune infiltration-related lymphocytes in these clusters. Moreover, the ICD score was well differentiated among patients with GBM, and the ICD score was considered an independent prognostic factor for patients with GBM. Furthermore, two datasets were used for the external validation of ICD scores as predictors of prognosis and immunotherapy outcomes. The validation analysis suggested that patients with high ICD scores had a worse prognosis. Additionally, a higher proportion of patients with high ICD scores were non-responsive to immunotherapy. Thus, the ICD score has the potential as a biomarker to predict the prognosis and immunotherapy outcomes of patients with GBM.
引用
收藏
页数:11
相关论文
共 62 条
[1]   TMB or not TMB as a biomarker: That is the question [J].
Addeo, Alfredo ;
Friedlaender, Alex ;
Banna, Giuseppe L. ;
Weiss, Glen J. .
CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY, 2021, 163
[2]   Impact of Rural vs. Urban Residence on Survival Rates of Patients with Glioblastoma: A Tertiary Care Center Experience [J].
Alwadei, Ali ;
Alnaami, Ibrahim ;
Alenazy, Kawthar ;
Marei, Amal ;
BaHammam, Leenh O. ;
Nasser, Sameh ;
Alswilem, Abdullah Mansour ;
Maklad, Ahmed ;
Shehata, Shehata F. ;
Alqahtani, Mohammad Salem ;
Al-Shahrani, Abdulelah ;
Balbaid, Ali .
BRAIN SCIENCES, 2022, 12 (09)
[3]   A dural lymphatic vascular system that drains brain interstitial fluid and macromolecules [J].
Aspelund, Aleksanteri ;
Antila, Salli ;
Proulx, Steven T. ;
Karlsen, Tine Veronica ;
Karaman, Sinem ;
Detmar, Michael ;
Wiig, Helge ;
Alitalo, Kari .
JOURNAL OF EXPERIMENTAL MEDICINE, 2015, 212 (07) :991-999
[4]   IFN-γ-related mRNA profile predicts clinical response to PD-1 blockade [J].
Ayers, Mark ;
Lunceford, Jared ;
Nebozhyn, Michael ;
Murphy, Erin ;
Loboda, Andrey ;
Kaufman, David R. ;
Albright, Andrew ;
Cheng, Jonathan D. ;
Kang, S. Peter ;
Shankaran, Veena ;
Piha-Paul, Sarina A. ;
Yearley, Jennifer ;
Seiwert, Tanguy Y. ;
Ribas, Antoni ;
McClanahan, Terrill K. .
JOURNAL OF CLINICAL INVESTIGATION, 2017, 127 (08) :2930-2940
[5]   Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas [J].
Brat, Daniel J. ;
Verhaak, Roel G. W. ;
Al-dape, Kenneth D. ;
Yung, W. K. Alfred ;
Salama, Sofie R. ;
Cooper, Lee A. D. ;
Rheinbay, Esther ;
Miller, C. Ryan ;
Vitucci, Mark ;
Morozova, Olena ;
Robertson, A. Gordon ;
Noushmehr, Houtan ;
Laird, Peter W. ;
Cherniack, Andrew D. ;
Akbani, Rehan ;
Huse, Jason T. ;
Ciriello, Giovanni ;
Poisson, Laila M. ;
Barnholtz-Sloan, Jill S. ;
Berger, Mitchel S. ;
Brennan, Cameron ;
Colen, Rivka R. ;
Colman, Howard ;
Flanders, Adam E. ;
Giannini, Caterina ;
Grifford, Mia ;
Iavarone, Antonio ;
Jain, Rajan ;
Joseph, Isaac ;
Kim, Jaegil ;
Kasaian, Katayoon ;
Mikkelsen, Tom ;
Murray, Bradley A. ;
O'Neill, Brian Patrick ;
Pachter, Lior ;
Parsons, Donald W. ;
Sougnez, Carrie ;
Sulman, Erik P. ;
Vandenberg, Scott R. ;
Van Meir, Erwin G. ;
von Deimling, Andreas ;
Zhang, Hailei ;
Crain, Daniel ;
Lau, Kevin ;
Mallery, David ;
Morris, Scott ;
Paulauskis, Joseph ;
Penny, Robert ;
Shelton, Troy ;
Sherman, Mark .
NEW ENGLAND JOURNAL OF MEDICINE, 2015, 372 (26) :2481-2498
[6]   Radiation plus Procarbazine, CCNU, and Vincristine in Low-Grade Glioma [J].
Buckner, Jan C. ;
Shaw, Edward G. ;
Pugh, Stephanie L. ;
Chakravarti, Arnab ;
Gilbert, Mark R. ;
Barger, Geoffrey R. ;
Coons, Stephen ;
Ricci, Peter ;
Bullard, Dennis ;
Brown, Paul D. ;
Stelzer, Keith ;
Brachman, David ;
Suh, John H. ;
Schultz, Christopher J. ;
Bahary, Jean-Paul ;
Fisher, Barbara J. ;
Kim, Harold ;
Murtha, Albert D. ;
Bell, Erica H. ;
Won, Minhee ;
Mehta, Minesh P. ;
Curran, Walter J., Jr. .
NEW ENGLAND JOURNAL OF MEDICINE, 2016, 374 (14) :1344-1355
[7]   Benefit From Procarbazine, Lomustine, and Vincristine in Oligodendroglial Tumors Is Associated With Mutation of IDH [J].
Cairncross, J. Gregory ;
Wang, Meihua ;
Jenkins, Robert B. ;
Shaw, Edward G. ;
Giannini, Caterina ;
Brachman, David G. ;
Buckner, Jan C. ;
Fink, Karen L. ;
Souhami, Luis ;
Laperriere, Normand J. ;
Huse, Jason T. ;
Mehta, Minesh P. ;
Curran, Walter J., Jr. .
JOURNAL OF CLINICAL ONCOLOGY, 2014, 32 (08) :783-+
[8]   X-tile: A new bio-informatics tool for biomarker assessment and outcome-based cut-point optimization [J].
Camp, RL ;
Dolled-Filhart, M ;
Rimm, DL .
CLINICAL CANCER RESEARCH, 2004, 10 (21) :7252-7259
[9]   Dissecting Prognosis Modules and Biomarkers in Glioblastoma Based on Weighted Gene Co-Expression Network Analysis [J].
Cao, Fang ;
Fan, Yinchun ;
Yu, Yunhu ;
Yang, Guohua ;
Zhong, Hua .
CANCER MANAGEMENT AND RESEARCH, 2021, 13 :5477-5489
[10]  
Carter T, 2016, CLIN ONCOL-UK, V28, P622, DOI 10.1016/j.clon.2016.04.042