Genome sequencing and de novo assembly of Trichoderma longibrachiatum isolate collected from Florida agricultural soils

被引：0

作者：

Tejada, Andrea Karina Suazo ^{[1
]}

Yu, Pei-Ling ^{[2
]}

Smith, Katherine E. ^{[3
]}

Huguet-Tapia, Jose C. ^{[2
]}

Carrillo, Joseph ^{[1
]}

Brawner, Jeremy T. ^{[2
]}

Vallad, Gary E. ^{[1
]}

机构：

[1] Univ Florida, Gulf Coast Res & Educ Ctr, Dept Plant Pathol, Wimauma, FL 32611 USA

[2] Univ Florida, Dept Plant Pathol, Gainesville, FL USA

[3] Southern Inst Forest Genet, USDA, US Forest Serv, Saucier, MS USA

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 01期

关键词：

Trichoderma longibrachiatum; genome; biocontrol;

D O I：

10.1128/mra.00906-23

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

We report a draft genome assembly of Trichoderma longibrachiatum isolate GEV 3550, obtained from Florida, United States of America.

引用

页数：3

共 17 条

[1]

[Anonymous], 2021, ILLUMINA

[2]

Carrillo JD, 2021, PHYTOPATHOLOGY, V111, P44

[3] Cellophane based mini-prep method for DNA extraction from the filamentous fungus Trichoderma reesei [J].

Cassago, Alexandre ;

Panepucci, Rodrigo Alexandre ;

Tortella Baiao, Ana Maria ;

Henrique-Silva, Flavio .

BMC MICROBIOLOGY, 2002, 2 (1) :1-4

[4] Accurate long-read de novo assembly evaluation with Inspector [J].

Chen, Yu ;

Zhang, Yixin ;

Wang, Amy Y. ;

Gao, Min ;

Chong, Zechen .

GENOME BIOLOGY, 2021, 22 (01)

[5] NanoPack: visualizing and processing long-read sequencing data [J].

De Coster, Wouter ;

D'Hert, Svenn ;

Schultz, Darrin T. ;

Cruts, Marc ;

Van Broeckhoven, Christine .

BIOINFORMATICS, 2018, 34 (15) :2666-2669

[6] Comparative Genomics of Fusarium circinatum Isolates Used to Screen Southern Pines for Pitch Canker Resistance [J].

Fulton, James C. ;

Yu, Pei-Ling ;

Smith, Katherine E. ;

Huguet-Tapia, Jose C. ;

Hudson, Owen ;

Meeks, April ;

Quesada, Tania ;

McKeever, Kathleen ;

Brawner, Jeremy T. .

MOLECULAR PLANT-MICROBE INTERACTIONS, 2022, 35 (06) :477-487

[7] Quantitative isolation of biocontrol agents Trichoderma spp., Gliocladium spp. and actinomycetes from soil with culture media [J].

Gil, S. Vargas ;

Pastor, S. ;

March, G. J. .

MICROBIOLOGICAL RESEARCH, 2009, 164 (02) :196-205

[8] QUAST: quality assessment tool for genome assemblies [J].

Gurevich, Alexey ;

Saveliev, Vladislav ;

Vyahhi, Nikolay ;

Tesler, Glenn .

BIOINFORMATICS, 2013, 29 (08) :1072-1075

[9] Assembly of long, error-prone reads using repeat graphs [J].

Kolmogorov, Mikhail ;

Yuan, Jeffrey ;

Lin, Yu ;

Pevzner, Pavel A. .

NATURE BIOTECHNOLOGY, 2019, 37 (05) :540-+

[10] The Longibrachiatum Clade of Trichoderma: a revision with new species [J].

Samuels, Gary J. ;

Ismaiel, Adnan ;

Mulaw, Temesgen B. ;

Szakacs, George ;

Druzhinina, Irina S. ;

Kubicek, Christian P. ;

Jaklitsch, Walter M. .

FUNGAL DIVERSITY, 2012, 55 (01) :77-108

← 1 2 →