Recent Advances in Computer-Aided Structure-Based Drug Design on Ion Channels

被引:6
|
作者
Pliushcheuskaya, Palina [1 ]
Kuenze, Georg [1 ,2 ]
机构
[1] Univ Leipzig, Inst Drug Discovery, Med Fac, Bruderstr 34, D-04103 Leipzig, Germany
[2] Univ Leipzig, Interdisciplinary Ctr Bioinformat, Hartelstr 16-18, D-04107 Leipzig, Germany
关键词
ion channels; ion channel structure; drug design; virtual screening; ligand docking; molecular dynamics; CRYO-EM STRUCTURE; POTASSIUM CHANNELS; SODIUM-CHANNELS; CHEMBL DATABASE; RECEPTOR; DISCOVERY; MECHANISMS; PREDICTION; BINDING; MODELS;
D O I
10.3390/ijms24119226
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ion channels play important roles in fundamental biological processes, such as electric signaling in cells, muscle contraction, hormone secretion, and regulation of the immune response. Targeting ion channels with drugs represents a treatment option for neurological and cardiovascular diseases, muscular degradation disorders, and pathologies related to disturbed pain sensation. While there are more than 300 different ion channels in the human organism, drugs have been developed only for some of them and currently available drugs lack selectivity. Computational approaches are an indispensable tool for drug discovery and can speed up, especially, the early development stages of lead identification and optimization. The number of molecular structures of ion channels has considerably increased over the last ten years, providing new opportunities for structure-based drug development. This review summarizes important knowledge about ion channel classification, structure, mechanisms, and pathology with the main focus on recent developments in the field of computer-aided, structure-based drug design on ion channels. We highlight studies that link structural data with modeling and chemoinformatic approaches for the identification and characterization of new molecules targeting ion channels. These approaches hold great potential to advance research on ion channel drugs in the future.
引用
收藏
页数:22
相关论文
共 50 条
  • [41] Structure-based computer-aided drug design to discover novel small molecules that target brain tumor stem cells
    Gu, Chunyu
    Mahasenan, Kiran V.
    Auvil, Tyler
    Joshi, Kaushal
    Gupta, Snehalata
    Mattson, Anita
    Li, Cheng
    Nakano, Ichiro
    CANCER RESEARCH, 2011, 71
  • [42] STRUCTURE-BASED COMPUTER-AIDED DRUG DESIGN TO DISCOVER NOVEL SMALL MOLECULES THAT TARGET BRAIN TUMOR STEM CELLS
    Gu, Chunyu
    Mahasenan, Kiran V.
    Joshi, Kaushal
    Gupta, Snehalata
    Mattson, Anita
    Li, Chenglong
    Nakano, Ichiro
    NEURO-ONCOLOGY, 2010, 12 : 121 - 121
  • [43] Advances in Drug Discovery and Design using Computer-aided Molecular Modeling
    Singh, Kuldeep
    Bhushan, Bharat
    Singh, Bhoopendra
    CURRENT COMPUTER-AIDED DRUG DESIGN, 2024, 20 (05) : 697 - 710
  • [44] Open-Source Browser-Based Tools for Structure-Based Computer-Aided Drug Discovery
    Wang, Ann
    Durrant, Jacob D.
    MOLECULES, 2022, 27 (14):
  • [45] Advances in structure-based allosteric drug design
    Li, Rui
    He, Xinheng
    Wu, Chengwei
    Li, Mingyu
    Zhang, Jian
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2025, 90
  • [46] Structure-based drug design: Computational advances
    Marrone, TJ
    Briggs, JM
    McCammon, JA
    ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY, 1997, 37 : 71 - 90
  • [47] ELECTROSTATICS IN COMPUTER-AIDED DRUG DESIGN
    NARAYSZABO, G
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY QUANTUM BIOLOGY SYMPOSIUM, NO 16, 1989, : 87 - 99
  • [48] Computer-Aided Drug Design for Undergraduates
    Tantillo, Dean J.
    Siegel, Justin B.
    Saunders, Carla M.
    Palazzo, Teresa A.
    Painter, Phillip P.
    O'Brien, Terrence E.
    Nunez, Nicole N.
    Nouri, Dustin H.
    Lodewyk, Michael W.
    Hudson, Brandi M.
    Hare, Stephanie R.
    Davis, Rebecca L.
    JOURNAL OF CHEMICAL EDUCATION, 2019, 96 (05) : 920 - 925
  • [49] Progress in Computer-Aided Drug Design
    Jorgensen, William L.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2006, 231
  • [50] COMPUTER-AIDED DRUG DESIGN APPLICATIONS
    BOYD, DB
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1993, 206 : 256 - PHYS