CT-Based Radiomics to Predict KRAS Mutation in CRC Patients Using a Machine Learning Algorithm: A Retrospective Study

被引:6
作者
Porto-Alvarez, Jacobo [1 ]
Cernadas, Eva [2 ]
Martinez, Rebeca Aldaz [1 ]
Fernandez-Delgado, Manuel [2 ]
Zapico, Emilio Huelga [1 ]
Gonzalez-Castro, Victor [3 ]
Baleato-Gonzalez, Sandra [1 ]
Garcia-Figueiras, Roberto [1 ]
Antunez-Lopez, J. Ramon [4 ]
Souto-Bayarri, Miguel [1 ]
机构
[1] Complexo Hosp Univ Santiago de Compostela, Dept Radiol, Santiago De Compostela 15706, Spain
[2] Univ Santiago de Compostela, Ctr Singular Invest Tecnol Intelixentes USC CiTIUS, Santiago De Compostela 15705, Spain
[3] Univ Leon, Dept Elect Syst & Automat Engn, Leon 24071, Spain
[4] Complexo Hosp Univ Santiago de Compostela, Dept Pathol, Santiago De Compostela 15706, Spain
关键词
KRAS mutation; colorectal cancer; texture analysis; radiomics; radiogenomics; METASTATIC COLORECTAL-CANCER; CLASSIFICATION; FEATURES; IMAGES;
D O I
10.3390/biomedicines11082144
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Colorectal cancer (CRC) is one of the most common types of cancer worldwide. The KRAS mutation is present in 30-50% of CRC patients. This mutation confers resistance to treatment with anti-EGFR therapy. This article aims at proving that computer tomography (CT)-based radiomics can predict the KRAS mutation in CRC patients. The piece is a retrospective study with 56 CRC patients from the Hospital of Santiago de Compostela, Spain. All patients had a confirmatory pathological analysis of the KRAS status. Radiomics features were obtained using an abdominal contrast enhancement CT (CECT) before applying any treatments. We used several classifiers, including AdaBoost, neural network, decision tree, support vector machine, and random forest, to predict the presence or absence of KRAS mutation. The most reliable prediction was achieved using the AdaBoost ensemble on clinical patient data, with a kappa and accuracy of 53.7% and 76.8%, respectively. The sensitivity and specificity were 73.3% and 80.8%. Using texture descriptors, the best accuracy and kappa were 73.2% and 46%, respectively, with sensitivity and specificity of 76.7% and 69.2%, also showing a correlation between texture patterns on CT images and KRAS mutation. Radiomics could help manage CRC patients, and in the future, it could have a crucial role in diagnosing CRC patients ahead of invasive methods.
引用
收藏
页数:13
相关论文
共 27 条
[11]   TEXTURAL FEATURES FOR IMAGE CLASSIFICATION [J].
HARALICK, RM ;
SHANMUGAM, K ;
DINSTEIN, I .
IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS, 1973, SMC3 (06) :610-621
[12]   Current status and quality of radiomic studies for predicting KRAS mutations in colorectal cancer patients: A systematic review and meta-analysis [J].
Jia, Lu-Lu ;
Zhao, Jian-Xin ;
Zhao, Lian-Ping ;
Tian, Jin-Hui ;
Huang, Gang .
EUROPEAN JOURNAL OF RADIOLOGY, 2023, 158
[13]   Primary and acquired resistance to EGFR-targeted therapies in colorectal cancer: impact on future treatment strategies [J].
Leto, Simonetta M. ;
Trusolino, Livio .
JOURNAL OF MOLECULAR MEDICINE-JMM, 2014, 92 (07) :709-722
[14]   Preoperative prediction of perineural invasion and KRAS mutation in colon cancer using machine learning [J].
Li, Yu ;
Eresen, Aydin ;
Shangguan, Junjie ;
Yang, Jia ;
Benson, Al B., III ;
Yaghmai, Vahid ;
Zhang, Zhuoli .
JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY, 2020, 146 (12) :3165-3174
[15]   Promises and challenges for the implementation of computational medical imaging (radiomics) in oncology [J].
Limkin, E. J. ;
Sun, R. ;
Dercle, L. ;
Zacharaki, E. I. ;
Robert, C. ;
Reuze, S. ;
Schernberg, A. ;
Paragios, N. ;
Deutsch, E. ;
Ferte, C. .
ANNALS OF ONCOLOGY, 2017, 28 (06) :1191-1206
[16]   Interrater reliability: the kappa statistic [J].
McHugh, Mary L. .
BIOCHEMIA MEDICA, 2012, 22 (03) :276-282
[17]   Association of Fusobacterium nucleatum with immunity and molecular alterations in colorectal cancer [J].
Nosho, Katsuhiko ;
Sukawa, Yasutaka ;
Adachi, Yasushi ;
Ito, Miki ;
Mitsuhashi, Kei ;
Kurihara, Hiroyoshi ;
Kanno, Shinichi ;
Yamamoto, Itaru ;
Ishigami, Keisuke ;
Igarashi, Hisayoshi ;
Maruyama, Reo ;
Imai, Kohzoh ;
Yamamoto, Hiroyuki ;
Shinomura, Yasuhisa .
WORLD JOURNAL OF GASTROENTEROLOGY, 2016, 22 (02) :557-566
[18]   Diet, microorganisms and their metabolites, and colon cancer [J].
O'Keefe, Stephen J. D. .
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY, 2016, 13 (12) :691-706
[19]   Multiresolution gray-scale and rotation invariant texture classification with local binary patterns [J].
Ojala, T ;
Pietikäinen, M ;
Mäenpää, T .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2002, 24 (07) :971-987
[20]   Digital Medical X-ray Imaging, CAD in Lung Cancer and Radiomics in Colorectal Cancer: Past, Present and Future [J].
Porto-Alvarez, Jacobo ;
Barnes, Gary T. ;
Villanueva, Alex ;
Garcia-Figueiras, Roberto ;
Baleato-Gonzalez, Sandra ;
Huelga Zapico, Emilio ;
Souto-Bayarri, Miguel .
APPLIED SCIENCES-BASEL, 2023, 13 (04)