Complete chloroplast genome of Lamiophlomis rotata: comparative genome analysis and phylogenetic analysis

被引:0
作者
Wang, Ji [1 ]
Mao, Xing-Xing [2 ]
Ma, Yazhen [3 ,4 ]
机构
[1] Sichuan Univ, Coll Life Sci, Key Lab Bioresource & Ecoenvironm, Minist Educ, Chengdu, Peoples R China
[2] Zhejiang Normal Univ, Coll Life Sci, Jinhua, Peoples R China
[3] Chinese Acad Sci, Wuhan Bot Garden, Wuhan, Peoples R China
[4] Chinese Acad Sci, Wuhan Bot Garden, Wuhan 430074, Peoples R China
基金
中国国家自然科学基金;
关键词
Chloroplast genome; Labiatae; Lamiophlomis rotata; comparative genomics; phylogenetic analysis; TRACHELIUM-CAERULEUM; DNA; REPEATS; MULTIPLE; REVEALS; NUCLEAR; MARKERS; GENE; REARRANGEMENTS; EVOLUTION;
D O I
10.1080/24701394.2023.2299382
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Lamiophlomis rotata, the only species within the genus Lamiophlomis (family Labiatae), exhibits a broad geographical distribution in elevated highland areas in Qinghai-Tibetan Plateau and possesses significant therapeutic properties. Numerous chemical compositions and putative phylogenetic affiliations of this species have been documented in prior research. Nevertheless, there is a scarcity of accessible publications regarding the genomic data of L. rotata, particularly its chloroplast genome. This dearth of knowledge hampers the comprehensive investigation of its phylogenetic placement within the Labiatae family. In this study, we present a comprehensive analysis of the plastid genome of L. rotata. The plastid genome has a length of 151,837 base pairs (bp) and a GC content of 38.5%. Within this genome, a total of 135 genes were identified, including 90 protein-coding genes, 37 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. By employing phylogenetic analysis, the taxonomic position of L. rotata within the family Labiatae is elucidated, highlighting a close relationship between the genus Lamiophlomis and the genus Phlomis. Notably, extensive genetic variations were uncovered between L. rotata and other Phlomis species. This study could provide significant insights for understanding the phylogenetic relationships of taxa within Labiatae.
引用
收藏
页码:29 / 39
页数:11
相关论文
共 71 条
  • [41] Chloroplast genome sequences from total DNA for plant identification
    Nock, Catherine J.
    Waters, Daniel L. E.
    Edwards, Mark A.
    Bowen, Stirling G.
    Rice, Nicole
    Cordeiro, Giovanni M.
    Henry, Robert J.
    [J]. PLANT BIOTECHNOLOGY JOURNAL, 2011, 9 (03) : 328 - 333
  • [42] INTRAMOLECULAR RECOMBINATION OF CHLOROPLAST GENOME MEDIATED BY SHORT DIRECT-REPEAT SEQUENCES IN WHEAT SPECIES
    OGIHARA, Y
    TERACHI, T
    SASAKUMA, T
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (22) : 8573 - 8577
  • [43] OHBA H, 1986, Journal of Japanese Botany, V61, P321
  • [44] Palmer J.D., 1991, MOL BIOL OFPLASTIDS, P5, DOI [10.1016/B978-0-12-715007-9.50009-8, DOI 10.1016/B978-0-12-715007-9.50009-8]
  • [45] Systematic positions of Lamiophlomis and Paraphlomis (Lamiaceae) based on nuclear and chloroplast sequences
    Pan, Yue-Zhi
    Fang, Li-Qin
    Hao, Gang
    Cai, Jie
    Gong, Xun
    [J]. JOURNAL OF SYSTEMATICS AND EVOLUTION, 2009, 47 (06) : 535 - 542
  • [46] Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
    Parks, Matthew
    Cronn, Richard
    Liston, Aaron
    [J]. BMC BIOLOGY, 2009, 7
  • [47] Nuclear and chloroplast DNA phylogeography reveals vicariance among European populations of the model species for the study of metal tolerance, Arabidopsis halleri (Brassicaceae)
    Pauwels, Maxime
    Vekemans, Xavier
    Gode, Cecile
    Frerot, Helene
    Castric, Vincent
    Saumitou-Laprade, Pierre
    [J]. NEW PHYTOLOGIST, 2012, 193 (04) : 916 - 928
  • [48] POLYMORPHIC SIMPLE SEQUENCE REPEAT REGIONS IN CHLOROPLAST GENOMES - APPLICATIONS TO THE POPULATION-GENETICS OF PINES
    POWELL, W
    MORGANTE, M
    MCDEVITT, R
    VENDRAMIN, GG
    RAFALSKI, JA
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (17) : 7759 - 7763
  • [49] PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
    Qu, Xiao-Jian
    Moore, Michael J.
    Li, De-Zhu
    Yi, Ting-Shuang
    [J]. PLANT METHODS, 2019, 15 (1)
  • [50] Raubeson L. A., 2005, Plant diversity and evolution: genotypic and phenotypic variation in higher plants, P45, DOI 10.1079/9780851999043.0045