Machine Learning Approach Based on a Range-Corrected Deep Potential Model for Efficient Vibrational Frequency Computation

被引:1
作者
Yang, Jitai [1 ]
Cong, Yang [1 ]
Li, You [1 ]
Li, Hui [1 ]
机构
[1] Jilin Univ, Inst Theoret Chem, Coll Chem, Changchun 130023, Peoples R China
基金
中国国家自然科学基金;
关键词
SPECTROSCOPY; DYNAMICS; QUANTUM; WATER; CHEMISTRY; SPECTRUM; PROTOCOL; PEPTIDE; PROBE; MAP;
D O I
10.1021/acs.jctc.3c00386
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
As an ensemble average result, vibrational spectrum simulation can be time-consuming with high accuracy methods. We present a machine learning approach based on the range-corrected deep potential (DPRc) model to improve the computing efficiency. The DPRc method divides the system into "probe region" and "solvent region"; "solvent-solvent" interactions are not counted in the neural network. We applied the approach to two systems: formic acid C=O stretching and MeCN C?N stretching vibrational frequency shifts in water. All data sets were prepared using the quantum vibration perturbation approach. Effects of different region divisions, one-body correction, cut range, and training data size were tested. The model with a single-molecule "probe region" showed stable accuracy; it ran roughly 10 times faster than regular deep potential and reduced the training time by about four. The approach is efficient, easy to apply, and extendable to calculating various spectra.
引用
收藏
页码:6366 / 6374
页数:9
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  • [31] Software News and Updates MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations
    Michaud-Agrawal, Naveen
    Denning, Elizabeth J.
    Woolf, Thomas B.
    Beckstein, Oliver
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2011, 32 (10) : 2319 - 2327
  • [32] Vibrational Sum-Frequency Generation Spectroscopy at the Water/Lipid Interface: Molecular Dynamics Simulation Study
    Nagata, Yuki
    Mukamel, Shaul
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (18) : 6434 - 6442
  • [33] Enhanced vibrational solvatochromism and spectral diffusion by electron rich substituents on small molecule silanes
    Olson, Courtney M.
    Grofe, Adam
    Huber, Christopher J.
    Spector, Ivan C.
    Gao, Jiali
    Massari, Aaron M.
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2017, 147 (12)
  • [34] Systematically convergent basis sets for explicitly correlated wavefunctions: The atoms H, He, B-Ne, and Al-Ar
    Peterson, Kirk A.
    Adler, Thomas B.
    Werner, Hans-Joachim
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (08)
  • [35] A machine learning vibrational spectroscopy protocol for spectrum prediction and spectrum-based structure recognition
    Ren, Hao
    Li, Hao
    Zhang, Qian
    Liang, Lijun
    Guo, Wenyue
    Huang, Fang
    Luo, Yi
    Jiang, Jun
    [J]. FUNDAMENTAL RESEARCH, 2021, 1 (04): : 488 - 494
  • [36] Structural Dynamics of a Catalytic Monolayer Probed by Ultrafast 2D IR Vibrational Echoes
    Rosenfeld, Daniel E.
    Gengeliczki, Zsolt
    Smith, Brian J.
    Stack, T. D. P.
    Fayer, M. D.
    [J]. SCIENCE, 2011, 334 (6056) : 634 - 639
  • [37] Water Dynamics in Gyroid Phases of Self-Assembled Gemini Surfactants
    Roy, Santanu
    Skoff, David
    Perroni, Dominic V.
    Mondal, Jagannath
    Yethiraj, Arun
    Mahanthappa, Mahesh K.
    Zanni, Martin T.
    Skinner, James L.
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2016, 138 (08) : 2472 - 2475
  • [38] Hydrophobic Collapse in N-Methylacetamide Water Mixtures
    Salamatova, Evgeniia
    Cunha, Ana V.
    Bloem, Robbert
    Roeters, Steven J.
    Woutersen, Sander
    Jansen, Thomas L. C.
    Pshenichnikov, Maxim S.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY A, 2018, 122 (09) : 2468 - 2478
  • [39] Contact Ion Pairs of Phosphate Groups in Water: Two-Dimensional Infrared Spectroscopy of Dimethyl Phosphate and ab Initio Simulations
    Schauss, Jakob
    Kundu, Achintya
    Fingerhut, Benjamin P.
    Elsaesser, Thomas
    [J]. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2019, 10 (20) : 6281 - 6286
  • [40] Advances in vibrational spectroscopy as a sensitive probe of peptide and protein structure - A critical review
    Schweitzer-Stenner, Reinhard
    [J]. VIBRATIONAL SPECTROSCOPY, 2006, 42 (01) : 98 - 117