Machine Learning Approach Based on a Range-Corrected Deep Potential Model for Efficient Vibrational Frequency Computation

被引:1
作者
Yang, Jitai [1 ]
Cong, Yang [1 ]
Li, You [1 ]
Li, Hui [1 ]
机构
[1] Jilin Univ, Inst Theoret Chem, Coll Chem, Changchun 130023, Peoples R China
基金
中国国家自然科学基金;
关键词
SPECTROSCOPY; DYNAMICS; QUANTUM; WATER; CHEMISTRY; SPECTRUM; PROTOCOL; PEPTIDE; PROBE; MAP;
D O I
10.1021/acs.jctc.3c00386
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
As an ensemble average result, vibrational spectrum simulation can be time-consuming with high accuracy methods. We present a machine learning approach based on the range-corrected deep potential (DPRc) model to improve the computing efficiency. The DPRc method divides the system into "probe region" and "solvent region"; "solvent-solvent" interactions are not counted in the neural network. We applied the approach to two systems: formic acid C=O stretching and MeCN C?N stretching vibrational frequency shifts in water. All data sets were prepared using the quantum vibration perturbation approach. Effects of different region divisions, one-body correction, cut range, and training data size were tested. The model with a single-molecule "probe region" showed stable accuracy; it ran roughly 10 times faster than regular deep potential and reduced the training time by about four. The approach is efficient, easy to apply, and extendable to calculating various spectra.
引用
收藏
页码:6366 / 6374
页数:9
相关论文
共 55 条
  • [1] Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
    Abraham, Mark James
    Murtola, Teemu
    Schulz, Roland
    Páll, Szilárd
    Smith, Jeremy C.
    Hess, Berk
    Lindah, Erik
    [J]. SoftwareX, 2015, 1-2 : 19 - 25
  • [2] Coherent Multidimensional Optical Spectroscopy of Excitons in Molecular Aggregates; Quasiparticle versus Supermolecule Perspectives
    Abramavicius, Darius
    Palmieri, Benoit
    Voronine, Dmitri V.
    Sanda, Frantisek
    Mukamel, Shaul
    [J]. CHEMICAL REVIEWS, 2009, 109 (06) : 2350 - 2408
  • [3] A simple and efficient CCSD(T)-F12 approximation
    Adler, Thomas B.
    Knizia, Gerald
    Werner, Hans-Joachim
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2007, 127 (22)
  • [4] [Anonymous], MOLPRO
  • [5] GFN2-xTB-An Accurate and Broadly Parametrized Self-Consistent Tight-Binding Quantum Chemical Method with Multipole Electrostatics and Density-Dependent Dispersion Contributions
    Bannwarth, Christoph
    Ehlert, Sebastian
    Grimme, Stefan
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2019, 15 (03) : 1652 - 1671
  • [6] Vibrational solvatochromism of nitrile infrared probes: beyond the vibrational Stark dipole approach
    Blasiak, Bartosz
    Ritchie, Andrew W.
    Webb, Lauren J.
    Cho, Minhaeng
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (27) : 18094 - 18111
  • [7] CHARMM: The Biomolecular Simulation Program
    Brooks, B. R.
    Brooks, C. L., III
    Mackerell, A. D., Jr.
    Nilsson, L.
    Petrella, R. J.
    Roux, B.
    Won, Y.
    Archontis, G.
    Bartels, C.
    Boresch, S.
    Caflisch, A.
    Caves, L.
    Cui, Q.
    Dinner, A. R.
    Feig, M.
    Fischer, S.
    Gao, J.
    Hodoscek, M.
    Im, W.
    Kuczera, K.
    Lazaridis, T.
    Ma, J.
    Ovchinnikov, V.
    Paci, E.
    Pastor, R. W.
    Post, C. B.
    Pu, J. Z.
    Schaefer, M.
    Tidor, B.
    Venable, R. M.
    Woodcock, H. L.
    Wu, X.
    Yang, W.
    York, D. M.
    Karplus, M.
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2009, 30 (10) : 1545 - 1614
  • [8] Coherent two-dimensional optical spectroscopy
    Cho, Minhaeng
    [J]. CHEMICAL REVIEWS, 2008, 108 (04) : 1331 - 1418
  • [9] Quantum vibration perturbation approach with polyatomic probe in simulating infrared spectra
    Cong, Yang
    Zhai, Yu
    Yang, Jitai
    Grofe, Adam
    Gao, Jiali
    Li, Hui
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2022, 24 (02) : 1174 - 1182
  • [10] THE DEVELOPMENT AND USE OF QUANTUM-MECHANICAL MOLECULAR-MODELS .76. AM1 - A NEW GENERAL-PURPOSE QUANTUM-MECHANICAL MOLECULAR-MODEL
    DEWAR, MJS
    ZOEBISCH, EG
    HEALY, EF
    STEWART, JJP
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1985, 107 (13) : 3902 - 3909