Protein diversification through post-translational modifications, alternative splicing, and gene duplication

被引:17
作者
Goldtzvik, Yonathan [1 ]
Sen, Neeladri [1 ]
Lam, Su Datt [1 ,2 ]
Orengo, Christine [1 ]
机构
[1] UCL, Dept Struct & Mol Biol, London, England
[2] Univ Kebangsaan Malaysia, Fac Sci & Technol, Dept Appl Phys, Bangi, Malaysia
基金
英国生物技术与生命科学研究理事会;
关键词
RIBOSOME HETEROGENEITY; EVOLUTION; PARALOG;
D O I
10.1016/j.sbi.2023.102640
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Proteins provide the basis for cellular function. Having multiple versions of the same protein within a single organism provides a way of regulating its activity or developing novel functions. Post-translational modifications of proteins, by means of adding/removing chemical groups to amino acids, allow for a well-regulated and controlled way of generating functionally distinct protein species. Alternative splicing is another method with which organisms possibly generate new isoforms. Addi-tionally, gene duplication events throughout evolution generate multiple paralogs of the same genes, resulting in multiple versions of the same protein within an organism. In this review, we discuss recent advancements in the study of these three methods of protein diversification and provide illustrative ex-amples of how they affect protein structure and function.
引用
收藏
页数:10
相关论文
共 96 条
[1]   Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level [J].
Abascal, Federico ;
Ezkurdia, Iakes ;
Rodriguez-Rivas, Juan ;
Manuel Rodriguez, Jose ;
del Pozo, Angela ;
Vazquez, Jesus ;
Valencia, Alfonso ;
Tress, Michael L. .
PLOS COMPUTATIONAL BIOLOGY, 2015, 11 (06)
[2]   Privateer: software for the conformational validation of carbohydrate structures [J].
Agirre, Jon ;
Iglesias-Fernandez, Javier ;
Rovira, Carme ;
Davies, Gideon J. ;
Wilson, Keith S. ;
Cowtan, Kevin D. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2015, 22 (11) :833-834
[3]   The case for post-predictional modifications in the AlphaFold Protein Structure Database [J].
Bagdonas, Haroldas ;
Fogarty, Carl A. ;
Fadda, Elisa ;
Agirre, Jon .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2021, 28 (11) :869-870
[4]   Modulation of Intrinsically Disordered Protein Function by Post-translational Modifications [J].
Bah, Alaji ;
Forman-Kay, Julie D. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2016, 291 (13) :6696-6705
[5]   The promises and pitfalls of specialized ribosomes [J].
Barna, Maria .
MOLECULAR CELL, 2022, 82 (12) :2179-2184
[6]   Evolution and functional cross-talk of protein post-translational modifications [J].
Beltrao, Pedro ;
Bork, Peer ;
Krogan, Nevan J. ;
van Noort, Vera .
MOLECULAR SYSTEMS BIOLOGY, 2013, 9
[7]   Sequential role of RAD51 paralog complexes in replication fork remodeling and restart [J].
Berti, Matteo ;
Teloni, Federico ;
Mijic, Sofija ;
Ursich, Sebastian ;
Fuchs, Jevgenij ;
Palumbieri, Maria Dilia ;
Krietsch, Jana ;
Schmid, Jonas A. ;
Garcin, Edwige B. ;
Gon, Stephanie ;
Modesti, Mauro ;
Altmeyer, Matthias ;
Lopes, Massimo .
NATURE COMMUNICATIONS, 2020, 11 (01)
[8]   Systematic evaluation of isoform function in literature reports of alternative splicing [J].
Bhuiyan, Shamsuddin A. ;
Ly, Sophia ;
Phan, Minh ;
Huntington, Brandon ;
Hogan, Ellie ;
Liu, Chao Chun ;
Liu, James ;
Pavlidis, Paul .
BMC GENOMICS, 2018, 19
[9]   The Relationship between Alternative Splicing and Proteomic Complexity [J].
Blencowe, Benjamin J. .
TRENDS IN BIOCHEMICAL SCIENCES, 2017, 42 (06) :407-408
[10]   The structural context of posttranslational modifications at a proteome-wide scale [J].
Bludau, Isabell ;
Willems, Sander ;
Zeng, Wen-Feng ;
Strauss, Maximilian T. ;
Hansen, Fynn M. ;
Tanzer, Maria C. ;
Karayel, Ozge ;
Schulman, Brenda A. ;
Mann, Matthias .
PLOS BIOLOGY, 2022, 20 (05)