PreCancer Atlas: Present and Future

被引:12
作者
Srivastava, Sudhir [1 ,3 ]
Wagner, Paul D. [1 ]
Hughes, Shannon K. [2 ]
Ghosh, Sharmistha [2 ]
机构
[1] NCI, Div Canc Prevent, NIH, Rockville, MD USA
[2] NCI, Div Canc Biol, NIH, Rockville, MD USA
[3] NCI, Canc Biomarkers Res Grp, Div Canc Prevent, 9609 Med Ctr Dr, Rm 5E136-9790, Bethesda, MD 20892 USA
关键词
CANCER; DYSPLASIA;
D O I
10.1158/1940-6207.CAPR-22-0435
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Precancer atlases have the potential to revolutionize how we think about the topographic and morphologic structures precancerous lesions in relation to cellular, molecular, genetic, and pathophysiologic states. This mini review uses the Human Tumor Atlas Network (HTAN), established the National Cancer Institute (NCI), to illustrate the construction of cellular and molecular three-dimensional atlases of human cancers as they evolve from precancerous lesions to advanced disease. We describe the collaborative nature of the network and the research to determine how and when premalignant lesions progress to invasive cancer, regress or obtain a state of equilibrium. We have attempted to highlight progress made by HTAN in building precancer atlases and discuss possible future directions. It is hoped that the lessons from our experience with HTAN will help other investigators engaged in the construction of precancer atlases to crystallize their thoughts on logistics, rationale, and implementation.
引用
收藏
页码:379 / 384
页数:6
相关论文
共 15 条
[1]   Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer [J].
Becker, Winston R. ;
Nevins, Stephanie A. ;
Chen, Derek C. ;
Chiu, Roxanne ;
Horning, Aaron M. ;
Guha, Tuhin K. ;
Laquindanum, Rozelle ;
Mills, Meredith ;
Chaib, Hassan ;
Ladabaum, Uri ;
Longacre, Teri ;
Shen, Jeanne ;
Esplin, Edward D. ;
Kundaje, Anshul ;
Ford, James M. ;
Curtis, Christina ;
Snyder, Michael P. ;
Greenleaf, William J. .
NATURE GENETICS, 2022, 54 (07) :985-+
[2]   The Case for a Pre-Cancer Genome Atlas (PCGA) [J].
Campbell, Joshua D. ;
Mazzilli, Sarah A. ;
Reid, Mary E. ;
Dhillon, Samjot S. ;
Platero, Suso ;
Beane, Jennifer ;
Spira, Avrum E. .
CANCER PREVENTION RESEARCH, 2016, 9 (02) :119-124
[3]   Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps [J].
Chen, Bob ;
Scurrah, Cherie' R. ;
McKinley, Eliot T. ;
Simmons, Alan J. ;
Ramirez-Solano, Marisol A. ;
Zhu, Xiangzhu ;
Markham, Nicholas O. ;
Heiser, Cody N. ;
Vega, Paige N. ;
Rolong, Andrea ;
Kim, Hyeyon ;
Sheng, Quanhu ;
Drewes, Julia L. ;
Zhou, Yuan ;
Southard-Smith, Austin N. ;
Xu, Yanwen ;
Ro, James ;
Jones, Angela L. ;
Revetta, Frank ;
Berry, Lynne D. ;
Niitsu, Hiroaki ;
Islam, Mirazul ;
Pelka, Karin ;
Hofree, Matan ;
Chen, Jonathan H. ;
Sarkizova, Siranush ;
Ng, Kimmie ;
Giannakis, Marios ;
Boland, Genevieve M. ;
Aguirre, Andrew J. ;
Anderson, Ana C. ;
Rozenblatt-Rosen, Orit ;
Regev, Aviv ;
Hacohen, Nir ;
Kawasaki, Kenta ;
Sato, Toshiro ;
Goettel, Jeremy A. ;
Grady, William M. ;
Zheng, Wei ;
Washington, M. Kay ;
Cai, Qiuyin ;
Sears, Cynthia L. ;
Goldenring, James R. ;
Franklin, Jeffrey L. ;
Su, Timothy ;
Huh, Won Jae ;
Vandekar, Simon ;
Roland, Joseph T. ;
Liu, Qi ;
Coffey, Robert J. .
CELL, 2021, 184 (26) :6262-+
[4]   Human Colon Cancer-Derived Clostridioides difficile Strains Drive Colonic Tumorigenesis in Mice [J].
Drewes, Julia L. ;
Chen, Jie ;
Markham, Nicholas O. ;
Knippel, Reece J. ;
Domingue, Jada C. ;
Tam, Ada J. ;
Chan, June L. ;
Kim, Lana ;
McMann, Madison ;
Stevens, Courtney ;
Dejea, Christine M. ;
Tomkovich, Sarah ;
Michel, John ;
White, James R. ;
Mohammad, Fuad ;
Campodonico, Victoria L. ;
Heiser, Cody N. ;
Wu, Xinqun ;
Wu, Shaoguang ;
Ding, Hua ;
Simner, Patricia ;
Carroll, Karen ;
Shrubsole, Martha J. ;
Anders, Robert A. ;
Walk, Seth T. ;
Jobin, Christian ;
Wan, Fengyi ;
Coffey, Robert J. ;
Housseau, Franck ;
Lau, Ken S. ;
Sears, Cynthia L. .
CANCER DISCOVERY, 2022, 12 (08) :1873-1885
[5]   Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data [J].
Hong, Rui ;
Koga, Yusuke ;
Bandyadka, Shruthi ;
Leshchyk, Anastasia ;
Wang, Yichen ;
Akavoor, Vidya ;
Cao, Xinyun ;
Sarfraz, Irzam ;
Wang, Zhe ;
Alabdullatif, Salam ;
Jansen, Frederick ;
Yajima, Masanao ;
Johnson, W. Evan ;
Campbell, Joshua D. .
NATURE COMMUNICATIONS, 2022, 13 (01)
[6]   Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer [J].
Lin, Jia-Ren ;
Wang, Shu ;
Coy, Shannon ;
Chen, Yu -An ;
Yapp, Clarence ;
Tyler, Madison ;
Nariya, Maulik K. ;
Heiser, Cody N. ;
Lau, Ken S. ;
Santagata, Sandro ;
Sorger, Peter K. .
CELL, 2023, 186 (02) :363-+
[7]   Persistence of Bronchial Dysplasia Is Associated with Development of Invasive Squamous Cell Carcinoma [J].
Merrick, Daniel T. ;
Gao, Dexiang ;
Miller, York E. ;
Keith, Robert L. ;
Baron, Anna E. ;
Feser, William ;
Kennedy, Timothy C. ;
Blatchford, Patrick J. ;
Braudrick, Sarah ;
Hirsch, Fred R. ;
Heasley, Lynn ;
Bunn, Paul A., Jr. ;
Franklin, Wilbur A. .
CANCER PREVENTION RESEARCH, 2016, 9 (01) :96-104
[8]  
NASIELL K, 1983, OBSTET GYNECOL, V61, P609
[9]   The Spatial Landscape of Progression and Immunoediting in Primary Melanoma at Single-Cell Resolution [J].
Nirmal, Ajit J. ;
Maliga, Zoltan ;
Vallius, Tuulia ;
Quattrochi, Brian ;
Chen, Alyce A. ;
Jacobson, Connor A. ;
Pelletier, Roxanne J. ;
Yapp, Clarence ;
Arias-Camison, Raquel ;
Chen, Yu-An ;
Lian, Christine G. ;
Murphy, George F. ;
Santagata, Sandro ;
Sorger, Peter K. .
CANCER DISCOVERY, 2022, 12 (06) :1518-1541
[10]   Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma [J].
Risom, Tyler ;
Glass, David R. ;
Averbukh, Inna ;
Liu, Candace C. ;
Baranski, Alex ;
Kagel, Adam ;
McCaffrey, Erin F. ;
Greenwald, Noah F. ;
Rivero-Gutierrez, Belen ;
Strand, Siri H. ;
Varma, Sushama ;
Kong, Alex ;
Keren, Leeat ;
Srivastava, Sucheta ;
Zhu, Chunfang ;
Khair, Zumana ;
Veis, Deborah J. ;
Deschryver, Katherine ;
Vennam, Sujay ;
Maley, Carlo ;
Hwang, E. Shelley ;
Marks, Jeffrey R. ;
Bendall, Sean C. ;
Colditz, Graham A. ;
West, Robert B. ;
Angelo, Michael .
CELL, 2022, 185 (02) :299-+