Establishment of a diagnostic model based on immune-related genes in children with asthma

被引:1
作者
Yuan, Yuyun [1 ]
Zhu, Honghua [2 ]
Huang, Sihong [1 ]
Zhang, Yantao [1 ]
Shen, Yiyun [1 ,3 ]
机构
[1] Shanghai Baoshan Hosp Integrated Tradit Chinese &, Dept Pediat, Shanghai 201999, Peoples R China
[2] Shanghai Seventh Peoples Hosp, Dept Med Imaging, Shanghai 200137, Peoples R China
[3] Shanghai Baoshan Hosp Integrated Tradit Chinese &, Dept Pediat, 181 Youyi Rd, Shanghai 201999, Peoples R China
关键词
Childhood asthma; Diagnosis; Immune cells; Pathways; ATOPIC ASTHMA; IL2RB GENES; T-CELLS; EXPRESSION; ASSOCIATION; CHILDHOOD; POLYMORPHISMS; PROFILES; RISK; INFLAMMATION;
D O I
10.1016/j.heliyon.2024.e25735
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Objective: Allergic asthma is driven by an antigen -specific immune response. This study aimed to identify immune -related differentially expressed genes in childhood asthma and establish a classification diagnostic model based on these genes. Methods: GSE65204 and GSE19187 were downloaded and served as training set and validation set. The immune cell composition was evaluated with ssGSEA algorithm based on the immunerelated gene set. Modules that significantly related to the asthma were selected by WGCNA algorithm. The immune -related differentially expressed genes (DE-IRGs) were screened, the protein -protein interaction network and diagnostic model of DE-IRGs was constructed. The pathway and immune correlation analysis of hub DE-IRGs was analyzed. Results: Eight immune cell types exhibited varying levels of abundance between the asthma and control groups. A total of 112 differentially expressed immune -related genes (DE-IRGs) was identified. Through the application of four ranking methods (MCC, MNC, DEGREE, and EPC), 17 hub DE-IRGs with overlapping significance were further selected. Subsequently, 8 optimized were identified using univariate logistic regression analysis and the LASSO regression algorithm, based on which a robust diagnostic model was constructed. Notably, TNF and CD40LG emerged as direct participants in asthma -related signaling pathways, displaying a positive correlation with the immune cell types of immature B cells, activated B cells, activated CD8 T cells, activated CD4 T cells, and myeloid -derived suppressor cells. Conclusion: The diagnostic model constructed using the DE-IRGs (CCL5, CCR5, CD40LG, CD8A, IL2RB, PDCD1, TNF, and ZAP70) exhibited high and specific diagnostic value for childhood asthma. The diagnostic model may contribute to the diagnosis of childhood asthma.
引用
收藏
页数:13
相关论文
共 71 条
  • [1] SNPs in FAM13A and IL2RB genes are associated with FeNO in adult subjects with asthma
    Accordini, Simone
    Lando, Valentina
    Calciano, Lucia
    Bombieri, Cristina
    Malerba, Giovanni
    Margagliotti, Antonino
    Minelli, Cosetta
    Potts, James
    van der Plaat, Diana A.
    Olivieri, Mario
    [J]. JOURNAL OF BREATH RESEARCH, 2024, 18 (01)
  • [2] Alubisia M.C., 2018, Health Related Quality of Life and its Determinants in Asthmatic Patients at Kenyatta National Hospital
  • [3] Expression profiling of genes related to asthma exacerbations
    Aoki, T.
    Matsumoto, Y.
    Hirata, K.
    Ochiai, K.
    Okada, M.
    Ichikawa, K.
    Shibasaki, M.
    Arinami, T.
    Sumazaki, R.
    Noguchi, E.
    [J]. CLINICAL AND EXPERIMENTAL ALLERGY, 2009, 39 (02) : 213 - 221
  • [4] An association between asthma and TNF-308G/A polymorphism: Meta-analysis
    Aoki T.
    Hirota T.
    Tamari M.
    Ichikawa K.
    Takeda K.
    Arinami T.
    Shibasaki M.
    Noguchi E.
    [J]. Journal of Human Genetics, 2006, 51 (8) : 677 - 685
  • [5] Sputum gene expression signature of 6 biomarkers discriminates asthma inflammatory phenotypes
    Baines, Katherine J.
    Simpson, Jodie L.
    Wood, Lisa G.
    Scott, Rodney J.
    Fibbens, Naomi L.
    Powell, Heather
    Cowan, Douglas C.
    Taylor, D. Robin
    Cowan, Jan O.
    Gibson, Peter G.
    [J]. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 2014, 133 (04) : 997 - 1007
  • [6] NCBI GEO: mining tens of millions of expression profiles - database and tools update
    Barrett, Tanya
    Troup, Dennis B.
    Wilhite, Stephen E.
    Ledoux, Pierre
    Rudnev, Dmitry
    Evangelista, Carlos
    Kim, Irene F.
    Soboleva, Alexandra
    Tomashevsky, Maxim
    Edgar, Ron
    [J]. NUCLEIC ACIDS RESEARCH, 2007, 35 : D760 - D765
  • [7] Association of CCR5-delta32 Mutation with Reduced Risk of Nonatopic Asthma in Slovenian Children
    Berce, Vojko
    Repnik, Katja
    Potocnik, Uros
    [J]. JOURNAL OF ASTHMA, 2008, 45 (09) : 780 - 784
  • [8] Serum Chemokines RANTES and Monocyte Chemoattractant Protein-1 in Egyptian Patients with Atopic Asthma: Relationship to Disease Severity
    Bessa, Sahar Saad-El-Din
    El-Magd, Gehan Hassan Abo
    Mabrouk, Maaly Mohamed
    [J]. ARCHIVES OF MEDICAL RESEARCH, 2012, 43 (01) : 36 - 41
  • [9] Bouzid D, 2013, GENET TEST MOL BIOMA, V17, P833, DOI [10.1089/gtmb.2013.0291, 10.1089/gtmb.2013.]
  • [10] Polymorphisms in the IL2, IL2RA and IL2RB genes in multiple sclerosis risk
    Cavanillas, Maria L.
    Alcina, Antonio
    Nunez, Concepcion
    de las Heras, Virginia
    Fernandez-Arquero, Miguel
    Bartolome, Manuel
    de la Concha, Emilio G.
    Fernandez, Oscar
    Arroyo, Rafael
    Matesanz, Fuencisla
    Urcelay, Elena
    [J]. EUROPEAN JOURNAL OF HUMAN GENETICS, 2010, 18 (07) : 794 - 799