SARS-CoV-2 Non-structural protein 1(NSP1) mutation virulence and natural selection: Evolutionary trends in the six continents

被引:13
作者
Ghaleh, Samira Salami [1 ]
Rahimian, Karim [2 ]
Mahmanzar, Mohammadamin [3 ]
Mahdavi, Bahar [4 ]
Tokhanbigli, Samaneh [5 ]
Sisakht, Mahsa Mollapour [6 ]
Farhadi, Amin [7 ]
Bakhtiari, Mahsa Mousakhan [8 ]
Kuehu, Donna Lee [3 ]
Deng, Youping [3 ]
机构
[1] Univ Guilan, Fac Sci, Dept Biol, Rasht, Iran
[2] Tarbiat Modares Univ, Fac Biol Sci, Bioinformat & Computat Omics Lab BioCOOL, Dept Biophys, Tehran, Iran
[3] Univ Hawaii Manoa, John A Burns Sch Med, Dept Quantitat Hlth Sci, Honolulu, HI 96813 USA
[4] ACECR, Royan Inst Biotechnol, Dept Mol Biotechnol, Cell Sci Res Ctr, Esfahan, Iran
[5] Islamic Azad Univ, Fac Adv Sci & Technol, Dept Mol & Cellular Sci, Pharmaceut Sci Branch, Tehran, Iran
[6] Erasmus MC, Dept Biochem, POB 2040, NL-3000 CA Rotterdam, Netherlands
[7] Payame Noor Univ, Dept Biol, Tehran, Iran
[8] Univ Tehran Med Sci, Pediat Cell Therapy Res Ctr, Childrens Med Ctr, Tehran, Iran
关键词
COVID-19; SARS-CoV-2; NSP1; Mutations; Translational inhibition; E87D; RESPIRATORY SYNDROME CORONAVIRUS; NSP1; HOST;
D O I
10.1016/j.virusres.2022.199016
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Objective: Rapid transmission and reproduction of RNA viruses prepare conducive conditions to have a high rate of mutations in their genetic sequence. The viral mutations make adapt the severe acute respiratory syndrome coronavirus 2 in the host environment and help the evolution of the virus then also caused a high mortality rate by the virus that threatens worldwide health. Mutations and adaptation help the virus to escape confrontations that are done against it.Methods: In the present study, we analyzed 6,510,947 sequences of non-structural protein 1 as one of the conserved regions of the virus to find out frequent mutations and substitute amino acids in comparison with the wild type. NSP1 mutations rate divided into continents were different.Results: Based on this continental categorization, E87D in global vision and also in Europe notably increased. The E87D mutation has signed up to January 2022 as the first frequent mutation observed. The remarkable muta-tions, H110Y and R24C have the second and third frequencies, respectively.Conclusion: According to the important role of non-structural protein 1 on the host mRNA translation, developing drug design against the protein could be so hopeful to find more effective ways the control and then treatment of the global pandemic coronavirus disease 2019.
引用
收藏
页数:10
相关论文
共 45 条
[1]   Deep Transfer Learning for COVID-19 Prediction: Case Study for Limited Data Problems [J].
Albahli, Saleh ;
Albattah, Waleed .
CURRENT MEDICAL IMAGING, 2021, 17 (08) :973-980
[2]   Mutational spectra of SARS-CoV-2 orf1ab polyprotein and signature mutations in the United States of America [J].
Banerjee, Shuvam ;
Seal, Sohan ;
Dey, Riju ;
Mondal, Kousik Kr ;
Bhattacharjee, Pritha .
JOURNAL OF MEDICAL VIROLOGY, 2021, 93 (03) :1428-1435
[3]   Emerging of a SARS-CoV-2 viral strain with a deletion in nsp1 [J].
Benedetti, Francesca ;
Snyder, Greg A. ;
Giovanetti, Marta ;
Angeletti, Silvia ;
Gallo, Robert C. ;
Ciccozzi, Massimo ;
Zella, Davide .
JOURNAL OF TRANSLATIONAL MEDICINE, 2020, 18 (01)
[4]   Lack of genomic imprinting of DNA primase, polypeptide 2 (PRIM2) in human term placenta and white blood cells [J].
Chung, Jaewook ;
Tsai, Shengdar ;
James, Andra H. ;
Thames, Betty H. ;
Shytle, Stephanie ;
Piedrahita, Jorge A. .
EPIGENETICS, 2012, 7 (05) :429-431
[5]   Identification of potential drugs against SARS-CoV-2 non-structural protein 1 (nsp1) [J].
de Lima Menezes, Gabriela ;
da Silva, Roosevelt Alves .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2021, 39 (15) :5657-5667
[6]   Impact of virus genetic variability and host immunity for the success of COVID-19 vaccines [J].
Dos Santos, Wagner Gouvea .
BIOMEDICINE & PHARMACOTHERAPY, 2021, 136
[7]   Data, disease and diplomacy: GISAID's innovative contribution to global health [J].
Elbe, Stefan ;
Buckland-Merrett, Gemma .
GLOBAL CHALLENGES, 2017, 1 (01) :33-46
[8]   Positive selection as a key player for SARS-CoV-2 pathogenicity: Insights into ORF1ab, S and E genes [J].
Emam, Mohamed ;
Oweda, Mariam ;
Antunes, Agostinho ;
El-Hadidi, Mohamed .
VIRUS RESEARCH, 2021, 302
[9]  
fooladinezhad H., 2022, medRxiv
[10]   Lethal Mutagenesis of RNA Viruses and Approved Drugs with Antiviral Mutagenic Activity [J].
Hadj Hassine, Ikbel ;
Ben M'hadheb, Manel ;
Menendez-Arias, Luis .
VIRUSES-BASEL, 2022, 14 (04)