Identification of cuproptosis-related gene clusters and immune cell infiltration in major burns based on machine learning models and experimental validation

被引:0
作者
Wang, Xin [1 ]
Xiong, Zhenfang [1 ]
Hong, Wangbing [1 ]
Liao, Xincheng [1 ]
Yang, Guangping [1 ]
Jiang, Zhengying [1 ]
Jing, Lanxin [1 ]
Huang, Shengyu [1 ]
Fu, Zhonghua [1 ]
Zhu, Feng [2 ,3 ]
机构
[1] Nanchang Univ, Med Ctr Burn Plast & Wound Repair, Affiliated Hosp 1, Nanchang, Jiangxi, Peoples R China
[2] Tongji Univ, Shanghai East Hosp, Dept Crit Care Med, Sch Med, Shanghai, Peoples R China
[3] Naval Med Univ, Affiliated Hosp 1, Dept Burns, Shanghai, Peoples R China
来源
FRONTIERS IN IMMUNOLOGY | 2024年 / 15卷
基金
中国国家自然科学基金;
关键词
cuproptosis; major burns; immune infiltration; molecular clusters; machine learning; STRUCTURAL BASIS; DEATH; OFD1; TOOL;
D O I
10.3389/fimmu.2024.1335675
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Introduction Burns are a global public health problem. Major burns can stimulate the body to enter a stress state, thereby increasing the risk of infection and adversely affecting the patient's prognosis. Recently, it has been discovered that cuproptosis, a form of cell death, is associated with various diseases. Our research aims to explore the molecular clusters associated with cuproptosis in major burns and construct predictive models.Methods We analyzed the expression and immune infiltration characteristics of cuproptosis-related factors in major burn based on the GSE37069 dataset. Using 553 samples from major burn patients, we explored the molecular clusters based on cuproptosis-related genes and their associated immune cell infiltrates. The WGCNA was utilized to identify cluster-specific genes. Subsequently, the performance of different machine learning models was compared to select the optimal model. The effectiveness of the predictive model was validated using Nomogram, calibration curves, decision curves, and an external dataset. Finally, five core genes related to cuproptosis and major burn have been was validated using RT-qPCR.Results In both major burn and normal samples, we determined the cuproptosis-related genes associated with major burns through WGCNA analysis. Through immune infiltrate profiling analysis, we found significant immune differences between different clusters. When K=2, the clustering number is the most stable. GSVA analysis shows that specific genes in cluster 2 are closely associated with various functions. After identifying the cross-core genes, machine learning models indicate that generalized linear models have better accuracy. Ultimately, a generalized linear model for five highly correlated genes was constructed, and validation with an external dataset showed an AUC of 0.982. The accuracy of the model was further verified through calibration curves, decision curves, and modal graphs. Further analysis of clinical relevance revealed that these correlated genes were closely related to time of injury.Conclusion This study has revealed the intricate relationship between cuproptosis and major burns. Research has identified 15 cuproptosis-related genes that are associated with major burn. Through a machine learning model, five core genes related to cuproptosis and major burn have been selected and validated.
引用
收藏
页数:15
相关论文
共 50 条
  • [31] Identification of cuproptosis-related subtypes, characterization of immune microenvironment infiltration, and development of a prognosis model for osteoarthritis
    Nong, Jiao
    Lu, Guanyu
    Huang, Yue
    Liu, Jinfu
    Chen, Lihua
    Pan, Haida
    Xiong, Bo
    FRONTIERS IN IMMUNOLOGY, 2023, 14
  • [32] Identification and validation of a novel cuproptosis-related lncRNA gene signature to predict prognosis and immune response in bladder cancer
    Chen, Jia
    Guan, Yu
    Li, Chun
    Du, Hexi
    Liang, Chaozhao
    DISCOVER ONCOLOGY, 2022, 13 (01)
  • [33] Exploring Cuproptosis-Related Genes and Diagnostic Models in Renal Ischemia-Reperfusion Injury Using Bioinformatics, Machine Learning, and Experimental Validation
    Xu, Changhong
    Deng, Yun
    Gong, Xinyi
    Wang, Huabin
    Man, Jiangwei
    Wang, Hailong
    Cheng, Kun
    Gui, Huiming
    Fu, Shengjun
    Wei, Shenghu
    Zheng, Xiaoling
    Che, Tuanjie
    Ding, Liyun
    Yang, Li
    JOURNAL OF INFLAMMATION RESEARCH, 2024, 17 : 8997 - 9020
  • [34] Prediction of immune infiltration and prognosis for patients with cholangiocarcinoma based on a cuproptosis-related lncRNA signature
    Yao, Hong-Fei
    He, Min
    Zhu, Yu-Heng
    Zhang, Bo
    Chen, Peng-Cheng
    Huo, Yan-Miao
    Zhang, Jun-Feng
    Yang, Chao
    HELIYON, 2024, 10 (01)
  • [35] A Newly Established Cuproptosis-Related Gene Signature for Predicting Prognosis and Immune Infiltration in Uveal Melanoma
    Huang, Wei
    Yang, Fan
    Zhang, Yichi
    Fang, Qianqi
    Lai, Yitao
    Lan, Yuqing
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (14)
  • [36] Exploration of a Predictive Model for Keloid and Potential Therapeutic Drugs Based on Immune Infiltration and Cuproptosis-Related Genes
    Liu, Jiaming
    Hu, Ding
    Wang, Yaojun
    Zhou, Xiaoqian
    Jiang, Liyuan
    Wang, Peng
    Lai, Haijing
    Wang, Yu
    Xiao, Houan
    JOURNAL OF BURN CARE & RESEARCH, 2024, 45 (05) : 1217 - 1231
  • [37] Identification and validation of a novel cuproptosis-related lncRNA gene signature to predict prognosis and immune response in bladder cancer
    Jia Chen
    Yu Guan
    Chun Li
    Hexi Du
    Chaozhao Liang
    Discover Oncology, 13
  • [38] Machine learning screening for Parkinson's disease-related cuproptosis-related typing development and validation and exploration of personalized drugs for cuproptosis genes
    Wu, Ji
    Qin, Chengjian
    Cai, Yuankun
    Zhou, Jiabin
    Xu, Dongyuan
    Lei, Yu
    Fang, Guoxing
    Chai, Songshan
    Xiong, Nanxiang
    ANNALS OF TRANSLATIONAL MEDICINE, 2023,
  • [39] Identification and validation of cuproptosis-related molecular clusters in non-alcoholic fatty liver disease
    Liu, Changxu
    Fang, Zhihao
    Yang, Kai
    Ji, Yanchao
    Yu, Xiaoxiao
    Guo, ZiHao
    Dong, Zhichao
    Zhu, Tong
    Liu, Chang
    JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2024, 28 (03)
  • [40] A novel cuproptosis-related gene signature of prognosis and immune microenvironment in head and neck squamous cell carcinoma cancer
    Jiang, Xu
    Ke, Jing
    Jia, Lifeng
    An, Xiang
    Ma, Haiyu
    Li, Zhongwan
    Yuan, Wei
    JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY, 2023, 149 (01) : 203 - 218