Identification of cuproptosis-related gene clusters and immune cell infiltration in major burns based on machine learning models and experimental validation

被引:0
作者
Wang, Xin [1 ]
Xiong, Zhenfang [1 ]
Hong, Wangbing [1 ]
Liao, Xincheng [1 ]
Yang, Guangping [1 ]
Jiang, Zhengying [1 ]
Jing, Lanxin [1 ]
Huang, Shengyu [1 ]
Fu, Zhonghua [1 ]
Zhu, Feng [2 ,3 ]
机构
[1] Nanchang Univ, Med Ctr Burn Plast & Wound Repair, Affiliated Hosp 1, Nanchang, Jiangxi, Peoples R China
[2] Tongji Univ, Shanghai East Hosp, Dept Crit Care Med, Sch Med, Shanghai, Peoples R China
[3] Naval Med Univ, Affiliated Hosp 1, Dept Burns, Shanghai, Peoples R China
来源
FRONTIERS IN IMMUNOLOGY | 2024年 / 15卷
基金
中国国家自然科学基金;
关键词
cuproptosis; major burns; immune infiltration; molecular clusters; machine learning; STRUCTURAL BASIS; DEATH; OFD1; TOOL;
D O I
10.3389/fimmu.2024.1335675
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Introduction Burns are a global public health problem. Major burns can stimulate the body to enter a stress state, thereby increasing the risk of infection and adversely affecting the patient's prognosis. Recently, it has been discovered that cuproptosis, a form of cell death, is associated with various diseases. Our research aims to explore the molecular clusters associated with cuproptosis in major burns and construct predictive models.Methods We analyzed the expression and immune infiltration characteristics of cuproptosis-related factors in major burn based on the GSE37069 dataset. Using 553 samples from major burn patients, we explored the molecular clusters based on cuproptosis-related genes and their associated immune cell infiltrates. The WGCNA was utilized to identify cluster-specific genes. Subsequently, the performance of different machine learning models was compared to select the optimal model. The effectiveness of the predictive model was validated using Nomogram, calibration curves, decision curves, and an external dataset. Finally, five core genes related to cuproptosis and major burn have been was validated using RT-qPCR.Results In both major burn and normal samples, we determined the cuproptosis-related genes associated with major burns through WGCNA analysis. Through immune infiltrate profiling analysis, we found significant immune differences between different clusters. When K=2, the clustering number is the most stable. GSVA analysis shows that specific genes in cluster 2 are closely associated with various functions. After identifying the cross-core genes, machine learning models indicate that generalized linear models have better accuracy. Ultimately, a generalized linear model for five highly correlated genes was constructed, and validation with an external dataset showed an AUC of 0.982. The accuracy of the model was further verified through calibration curves, decision curves, and modal graphs. Further analysis of clinical relevance revealed that these correlated genes were closely related to time of injury.Conclusion This study has revealed the intricate relationship between cuproptosis and major burns. Research has identified 15 cuproptosis-related genes that are associated with major burn. Through a machine learning model, five core genes related to cuproptosis and major burn have been selected and validated.
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页数:15
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