Advancing Strongyloides omics data: bridging the gap with Caenorhabditis elegans

被引:2
作者
Al-Jawabreh, Reem [1 ]
Lastik, Dominika [1 ]
Mckenzie, Darrin [2 ]
Reynolds, Kieran [1 ]
Suleiman, Mona [1 ]
Mousley, Angela [2 ]
Atkinson, Louise [2 ]
Hunt, Vicky [1 ]
机构
[1] Univ Bath, Dept Life Sci, Bath BA2 7AY, England
[2] Queens Univ Belfast, Belfast BT9 5DL, North Ireland
关键词
Strongyloides; genomics; transcriptomics; proteomics; small RNA; transposable elements; EXTRACELLULAR VESICLES; PARASITIC NEMATODE; DEVELOPMENTAL-STAGES; PROTEOMIC ANALYSIS; SMALL RNAS; TRANSPOSABLE ELEMENTS; GENE-EXPRESSION; WEB SERVER; STERCORALIS; IDENTIFICATION;
D O I
10.1098/rstb.2022.0437
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Among nematodes, the free-living model organism Caenorhabditis elegans boasts the most advanced portfolio of high-quality omics data. The resources available for parasitic nematodes, including Strongyloides spp., however, are lagging behind. While C. elegans remains the most tractable nematode and has significantly advanced our understanding of many facets of nematode biology, C. elegans is not suitable as a surrogate system for the study of parasitism and it is important that we improve the omics resources available for parasitic nematode species. Here, we review the omics data available for Strongyloides spp. and compare the available resources to those for C. elegans and other parasitic nematodes. The advancements in C. elegans omics offer a blueprint for improving omics-led research in Strongyloides. We suggest areas of priority for future research that will pave the way for expansions in omics resources and technologies.This article is part of the Theo Murphy meeting issue 'Strongyloides: omics to worm-free populations'.
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页数:22
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共 211 条
  • [1] Conserved miRNAs Are Candidate Post-Transcriptional Regulators of Developmental Arrest in Free-Living and Parasitic Nematodes
    Ahmed, Rina
    Chang, Zisong
    Younis, Abuelhassan Elshazly
    Langnick, Claudia
    Li, Na
    Chen, Wei
    Brattig, Norbert
    Dieterich, Christoph
    [J]. GENOME BIOLOGY AND EVOLUTION, 2013, 5 (07): : 1246 - 1260
  • [2] Molecular typing of Strongyloides stercoralis in Latin America, the clinical connection
    Analia Repetto, Silvia
    Quarroz Braghini, Juan
    Guadalupe Risso, Marikena
    Belen Arguello, Lisana
    Ines Batalla, Estela
    Ricardo Stecher, Daniel
    Fernanda Sierra, Mariela
    Miguel Burgos, Juan
    Victor Radisic, Marcelo
    Gonzalez Cappa, Stella Maris
    Ruybal, Paula
    [J]. PARASITOLOGY, 2022, 149 (01) : 24 - 34
  • [3] Natural genetic variation as a tool for discovery in Caenorhabditis nematodes
    Andersen, Erik C.
    Rockman, Matthew, V
    [J]. GENETICS, 2022, 220 (01)
  • [4] Trichuris sp and Strongyloides sp Infections in a Free-Ranging Baboon Colony
    Anderson, J.
    Upadhayay, R.
    Sudimack, D.
    Nair, S.
    Leland, M.
    Williams, J. T.
    Anderson, T. J. C.
    [J]. JOURNAL OF PARASITOLOGY, 2012, 98 (01) : 205 - 208
  • [5] Exploratory analysis of transposable elements expression in the C. elegans early embryo
    Ansaloni, Federico
    Scarpato, Margherita
    Di Schiavi, Elia
    Gustincich, Stefano
    Sanges, Remo
    [J]. BMC BIOINFORMATICS, 2019, 20 (Suppl 9)
  • [6] Analysis of repeat elements in the Pristionchus pacificus genome reveals an ancient invasion by horizontally transferred transposons
    Athanasouli, Marina
    Roedelsperger, Christian
    [J]. BMC GENOMICS, 2022, 23 (01)
  • [7] Ascaris suum Informs Extrasynaptic Volume Transmission in Nematodes
    Atkinson, Louise E.
    Liu, Yang
    McKay, Fiona
    Vandewyer, Elke
    Viau, Charles
    Irvine, Allister
    Rosa, Bruce A.
    Li, Zihui
    Liang, Qingxiao
    Marks, Nikki J.
    Maule, Aaron G.
    Mitreva, Makedonka
    Beets, Isabel
    Li, Lingjun
    Mousley, Angela
    [J]. ACS CHEMICAL NEUROSCIENCE, 2021, 12 (17): : 3176 - 3188
  • [8] Genomic studies on Strongyloides stercoralis in northern and western Thailand
    Aupalee, Kittipat
    Wijit, Adulsak
    Singphai, Kittikhun
    Roedelsperger, Christian
    Zhou, Siyu
    Saeung, Atiporn
    Streit, Adrian
    [J]. PARASITES & VECTORS, 2020, 13 (01)
  • [9] Peptidomics of the larval Drosophila melanogaster central nervous system
    Baggerman, G
    Cerstiaens, A
    De Loof, A
    Schoofs, L
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (43) : 40368 - 40374
  • [10] "One code to find them all": a perl tool to conveniently parse RepeatMasker output files
    Bailly-Bechet, Marc
    Haudry, Annabelle
    Lerat, Emmanuelle
    [J]. MOBILE DNA, 2014, 5