Advancing Strongyloides omics data: bridging the gap with Caenorhabditis elegans

被引:3
作者
Al-Jawabreh, Reem [1 ]
Lastik, Dominika [1 ]
Mckenzie, Darrin [2 ]
Reynolds, Kieran [1 ]
Suleiman, Mona [1 ]
Mousley, Angela [2 ]
Atkinson, Louise [2 ]
Hunt, Vicky [1 ]
机构
[1] Univ Bath, Dept Life Sci, Bath BA2 7AY, England
[2] Queens Univ Belfast, Belfast BT9 5DL, North Ireland
关键词
Strongyloides; genomics; transcriptomics; proteomics; small RNA; transposable elements; EXTRACELLULAR VESICLES; PARASITIC NEMATODE; DEVELOPMENTAL-STAGES; PROTEOMIC ANALYSIS; SMALL RNAS; TRANSPOSABLE ELEMENTS; GENE-EXPRESSION; WEB SERVER; STERCORALIS; IDENTIFICATION;
D O I
10.1098/rstb.2022.0437
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Among nematodes, the free-living model organism Caenorhabditis elegans boasts the most advanced portfolio of high-quality omics data. The resources available for parasitic nematodes, including Strongyloides spp., however, are lagging behind. While C. elegans remains the most tractable nematode and has significantly advanced our understanding of many facets of nematode biology, C. elegans is not suitable as a surrogate system for the study of parasitism and it is important that we improve the omics resources available for parasitic nematode species. Here, we review the omics data available for Strongyloides spp. and compare the available resources to those for C. elegans and other parasitic nematodes. The advancements in C. elegans omics offer a blueprint for improving omics-led research in Strongyloides. We suggest areas of priority for future research that will pave the way for expansions in omics resources and technologies.This article is part of the Theo Murphy meeting issue 'Strongyloides: omics to worm-free populations'.
引用
收藏
页数:22
相关论文
共 211 条
[1]   Conserved miRNAs Are Candidate Post-Transcriptional Regulators of Developmental Arrest in Free-Living and Parasitic Nematodes [J].
Ahmed, Rina ;
Chang, Zisong ;
Younis, Abuelhassan Elshazly ;
Langnick, Claudia ;
Li, Na ;
Chen, Wei ;
Brattig, Norbert ;
Dieterich, Christoph .
GENOME BIOLOGY AND EVOLUTION, 2013, 5 (07) :1246-1260
[2]   Molecular typing of Strongyloides stercoralis in Latin America, the clinical connection [J].
Analia Repetto, Silvia ;
Quarroz Braghini, Juan ;
Guadalupe Risso, Marikena ;
Belen Arguello, Lisana ;
Ines Batalla, Estela ;
Ricardo Stecher, Daniel ;
Fernanda Sierra, Mariela ;
Miguel Burgos, Juan ;
Victor Radisic, Marcelo ;
Gonzalez Cappa, Stella Maris ;
Ruybal, Paula .
PARASITOLOGY, 2022, 149 (01) :24-34
[3]   Natural genetic variation as a tool for discovery in Caenorhabditis nematodes [J].
Andersen, Erik C. ;
Rockman, Matthew, V .
GENETICS, 2022, 220 (01)
[4]   Trichuris sp and Strongyloides sp Infections in a Free-Ranging Baboon Colony [J].
Anderson, J. ;
Upadhayay, R. ;
Sudimack, D. ;
Nair, S. ;
Leland, M. ;
Williams, J. T. ;
Anderson, T. J. C. .
JOURNAL OF PARASITOLOGY, 2012, 98 (01) :205-208
[5]   Exploratory analysis of transposable elements expression in the C. elegans early embryo [J].
Ansaloni, Federico ;
Scarpato, Margherita ;
Di Schiavi, Elia ;
Gustincich, Stefano ;
Sanges, Remo .
BMC BIOINFORMATICS, 2019, 20 (Suppl 9)
[6]   Analysis of repeat elements in the Pristionchus pacificus genome reveals an ancient invasion by horizontally transferred transposons [J].
Athanasouli, Marina ;
Roedelsperger, Christian .
BMC GENOMICS, 2022, 23 (01)
[7]   Ascaris suum Informs Extrasynaptic Volume Transmission in Nematodes [J].
Atkinson, Louise E. ;
Liu, Yang ;
McKay, Fiona ;
Vandewyer, Elke ;
Viau, Charles ;
Irvine, Allister ;
Rosa, Bruce A. ;
Li, Zihui ;
Liang, Qingxiao ;
Marks, Nikki J. ;
Maule, Aaron G. ;
Mitreva, Makedonka ;
Beets, Isabel ;
Li, Lingjun ;
Mousley, Angela .
ACS CHEMICAL NEUROSCIENCE, 2021, 12 (17) :3176-3188
[8]   Genomic studies on Strongyloides stercoralis in northern and western Thailand [J].
Aupalee, Kittipat ;
Wijit, Adulsak ;
Singphai, Kittikhun ;
Roedelsperger, Christian ;
Zhou, Siyu ;
Saeung, Atiporn ;
Streit, Adrian .
PARASITES & VECTORS, 2020, 13 (01)
[9]   Peptidomics of the larval Drosophila melanogaster central nervous system [J].
Baggerman, G ;
Cerstiaens, A ;
De Loof, A ;
Schoofs, L .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (43) :40368-40374
[10]   "One code to find them all": a perl tool to conveniently parse RepeatMasker output files [J].
Bailly-Bechet, Marc ;
Haudry, Annabelle ;
Lerat, Emmanuelle .
MOBILE DNA, 2014, 5