Halobacillus salinarum sp. nov., Halobacillus shinanisalinarum sp. nov. and Halobacillus amylolyticus sp. nov., isolated from saltern soil

被引:1
作者
Kim, Yiseul [1 ]
Kim, Seunghwan [1 ]
Kwon, Soon-Wo [1 ]
Weon, Hang-Yeon [1 ]
Naito, Hanako [2 ]
Asano, Tomomi [2 ]
Hamada, Moriyuki [2 ]
Heo, Jun [1 ]
机构
[1] Natl Inst Agr Sci, Rural Dev Adm, Agr Microbiol Div, Jeollabuk Do 55365, South Korea
[2] Natl Inst Technol & Evaluat, NITE Biol Resource Ctr NBRC, 2-5-8 Kazusakamatari, Kisarazu, Chiba 2920818, Japan
关键词
Halobacillus salinarum sp. nov; Halobacillus shinanisalinarum sp. nov; saltern; soil; MARINE SOLAR SALTERN; PEPTIDOGLYCAN; TAXONOMY; ACID; SEA;
D O I
10.1099/ijsem.0.006098
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Three bacterial strains, designated SSBR10- 3T, SSTM10-2T and SSHM10- 5T, were isolated from saltern soil sampled in Jeollanam- do, Republic of Korea. Cells were aerobic, Gram- stain-positive, flagellated and rod-shaped. The strains grew optimally at 28 degrees C and at pH 7.0. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strains SSBR10- 3T, SSTM102T and SSHM10- 5T were placed within the genus Halobacillus, showing the highest similarity to Halobacillus alkaliphilus FP5T (98.6 %), 'Halobacillus ihumii' Marseille-Q1234T (98.5 %) and Halobacillus locisalis MSS-155T (98.6 %), respectively. The genomic similarity values between strains SSBR10- 3T, SSTM10-2T and SSHM10- 5T and their related species were 17.6-22.6 % for digital DNA-DNA hybridization (dDDH) and 69.6-78.5 % for orthologous average nucleotide identity (OrthoANI), which were lower than the thresholds recommended for species delineation. The dDDH and OrthoANI values among the three strains were below 38.3 and 89.4 %, respectively. Besides the differences in genomic features, strains SSBR10- 3T, SSTM10-2T and SSHM10- 5T were distinct from each other and from members of the genus in terms of phenotypic traits related to substrate assimilation. The cell -wall peptidoglycan contained meso- diaminopimelic acid, the major fatty acids were anteisoC15:0, iso-C16: 0 and anteisoC17:0, and the predominant menaquinone was MK -7 for all three strains. Diphosphatidylglycerol, phosphatidylglycerol and an unidentified phospholipid were present in their polar lipid profiles. Based on a polyphasic approach incorporating genomic data, strains SSBR10- 3T, SSTM10-2T and SSHM10- 5T represent novel species, for which the names Halobacillus salinarum sp. nov. (SSBR10- 3T=DSM 114353T=KACC 21935T=NBRC 115504T), Halobacillus shinanisalinarum sp. nov. (SSTM10- 2T=DSM 114354T=KACC 21936T=NBRC 115505T) and Halobacillus amylolyticus sp. nov. (SSHM10- 5T=DSM 114355T= KACC 21937T=NBRC 115506T) are proposed.
引用
收藏
页数:10
相关论文
共 44 条
  • [1] Halobacillus karajensis sp nov., a novel moderate halophile
    Amoozegar, MA
    Malekzadeh, F
    Malik, KA
    Schumann, P
    Spröer, C
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2003, 53 : 1059 - 1063
  • [2] KBase: The United States Department of Energy Systems Biology Knowledgebase
    Arkin, Adam P.
    Cottingham, Robert W.
    Henry, Christopher S.
    Harris, Nomi L.
    Stevens, Rick L.
    Maslov, Sergei
    Dehal, Paramvir
    Ware, Doreen
    Perez, Fernando
    Canon, Shane
    Sneddon, Michael W.
    Henderson, Matthew L.
    Riehl, William J.
    Murphy-Olson, Dan
    Chan, Stephen Y.
    Kamimura, Roy T.
    Kumari, Sunita
    Drake, Meghan M.
    Brettin, Thomas S.
    Glass, Elizabeth M.
    Chivian, Dylan
    Gunter, Dan
    Weston, David J.
    Allen, Benjamin H.
    Baumohl, Jason
    Best, Aaron A.
    Bowen, Ben
    Brenner, Steven E.
    Bun, Christopher C.
    Chandonia, John-Marc
    Chia, Jer-Ming
    Colasanti, Ric
    Conrad, Neal
    Davis, James J.
    Davison, Brian H.
    DeJongh, Matthew
    Devoid, Scott
    Dietrich, Emily
    Dubchak, Inna
    Edirisinghe, Janaka N.
    Fang, Gang
    Faria, Jose P.
    Frybarger, Paul M.
    Gerlach, Wolfgang
    Gerstein, Mark
    Greiner, Annette
    Gurtowski, James
    Haun, Holly L.
    He, Fei
    Jain, Rashmi
    [J]. NATURE BIOTECHNOLOGY, 2018, 36 (07) : 566 - 569
  • [3] antiSMASH 6.0: improving cluster detection and comparison capabilities
    Blin, Kai
    Shaw, Simon
    Kloosterman, Alexander M.
    Charlop-Powers, Zach
    van Wezel, Gilles P.
    Medema, Marnix H.
    Weber, Tilmann
    [J]. NUCLEIC ACIDS RESEARCH, 2021, 49 (W1) : W29 - W35
  • [4] Halobacillus fulvus sp. nov., a moderately halophilic bacterium isolated from shrimp paste (Ka-pi) in Thailand
    Booncharoen, Auttaporn
    Visessanguan, Wonnop
    Kuncharoen, Nattakorn
    Yiamsombut, Supalurk
    Santiyanont, Pannita
    Mhuantong, Wuttichai
    Rojsitthisak, Pornchai
    Tanasupawat, Somboon
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71 (11)
  • [5] RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
    Brettin, Thomas
    Davis, James J.
    Disz, Terry
    Edwards, Robert A.
    Gerdes, Svetlana
    Olsen, Gary J.
    Olson, Robert
    Overbeek, Ross
    Parrello, Bruce
    Pusch, Gordon D.
    Shukla, Maulik
    Thomason, James A., III
    Stevens, Rick
    Vonstein, Veronika
    Wattam, Alice R.
    Xia, Fangfang
    [J]. SCIENTIFIC REPORTS, 2015, 5
  • [6] Chun J, 2018, INT J SYST EVOL MICR, V68, P461, DOI [10.1099/ijsem.0.002516, 10.1099/ijsem.0.002532]
  • [7] EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH
    FELSENSTEIN, J
    [J]. JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) : 368 - 376
  • [8] FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
  • [9] TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY
    FITCH, WM
    [J]. SYSTEMATIC ZOOLOGY, 1971, 20 (04): : 406 - &
  • [10] 1,4,5,6-TETRAHYDRO-2-METHYL-4-PYRIMIDINECARBOXYLIC ACID - A NOVEL CYCLIC AMINO-ACID FROM HALOPHILIC PHOTOTROPHIC BACTERIA OF THE GENUS ECTOTHIORHODOSPIRA
    GALINSKI, EA
    PFEIFFER, HP
    TRUPER, HG
    [J]. EUROPEAN JOURNAL OF BIOCHEMISTRY, 1985, 149 (01): : 135 - 139