Rufibacter roseolus sp. nov. and Rufibacter aurantiacus sp. nov., isolated from desert soil

被引:1
作者
Li, Shuai [1 ,2 ,3 ]
Dong, Lei [2 ,3 ]
Lian, Wen-Hui [2 ,3 ]
Lin, Zhi-Liang [2 ,3 ]
Wei, Qi-Chuang [2 ,3 ]
Xiao, Min [2 ,3 ]
Li, Wen-Jun [2 ,3 ,4 ]
机构
[1] Jiaying Univ, Sch Life Sci, Meizhou, Peoples R China
[2] Sun Yat Sen Univ, Sch Life Sci, State Key Lab Biocontrol, Guangdong Prov Key Lab Plant Resources, Guangzhou, Peoples R China
[3] Sun Yat Sen Univ, Sch Life Sci, Southern Marine Sci & Engn Guangdong Lab Zhuhai, Guangzhou, Peoples R China
[4] Chinese Acad Sci, Xinjiang Inst Ecol & Geog, State Key Lab Desert & Oasis Ecol, Urumqi, Peoples R China
基金
中国国家自然科学基金;
关键词
Gurbantunggut Desert; polyphasic taxonomy; Rufibacter aurantiacus; Rufibacter roseolus; whole-genome sequencing; GENOME SEQUENCE; GEN; NOV; BACTERIAL; DNA; SUBSTITUTIONS; QUALITY;
D O I
10.1099/ijsem.0.006093
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two novel bacterial strains, designated as SYSU D00344(T) and SYSU D00433(T), were isolated from soil of Gurbantunggut Desert in Xinjiang, north-west PR China. Cells of both strains were Gram-stain-negative, aerobic, short-rod-shaped, catalase-positive and non-motile. Oxidase activities of SYSU D00344(T) and SYSU D00433T were negative and positive, respectively. Optimal growth occurred at 30 degrees C, with 0-0.5 % (w/v) NaCl and at pH 7.0. The results of phylogenetic analysis of 16S rRNA gene sequences indicated that they represented members of the genus Rufibacter and were closely related to Rufibacter hautae NBS58-1(T). The results of phylogenomic analysis indicated that the two strains formed two independent and robust branches distinct from all reference type strains. The analyses of average nucleotide identity (ANI), digital DNA-DNA hybridisation (dDDH) values and 16S rRNA gene similarities between the two strains and their relatives further demonstrated that SYSU D00344(T) and SYSU D00433(T) represented two different novel genospecies. The polar lipids consisted of phosphatidylethanolamine, one unidentified glycolipid, two unidentified aminophospholipids, and two or four unidentified lipids. MK-7 was the only respiratory quinone. The major fatty acids (>10 %) for both strains were identified as iso-C-15 : 0, anteiso-C-15 : 0 and summed feature 3 (C-16 : 1 omega 7c and/or C-16 : 1 omega 6c), as well as summed feature 4 (anteiso-C17 : 1B and/or iso-C17 : 1I) for SYSU D00344(T) and C-16 : 1 omega 5c for SYSU D00433(T). On the basis of the phylogenetic, phenotypic, chemotaxonomic and genotypic characteristics, we propose Rufibacter roseolus sp. nov. and Rufibacter aurantiacus sp. nov. as two novel species in the genus Rufibacter . The type strains are SYSU D00344(T) (=CGMCC 1.8625(T)=MCCC 1K04971(T)=KCTC 82274(T)) and SYSU D00433(T) (=CGMCC 1.8617(T)=MCCC 1K04982(T)=KCTC 82277(T)), respectively.
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页数:12
相关论文
共 40 条
[1]   Rufibacter tibetensis gen. nov., sp nov., a novel member of the family Cytophagaceae isolated from soil [J].
Abaydulla, Gulsimay ;
Luo, Xuesong ;
Shi, Jingjing ;
Peng, Fang ;
Liu, Ming ;
Wang, Yaqiong ;
Dai, Jun ;
Fang, Chengxiang .
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2012, 101 (04) :725-731
[2]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[3]   antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation [J].
Blin, Kai ;
Shaw, Simon ;
Augustijn, Hannah E. ;
Reitz, Zachary L. ;
Biermann, Friederike ;
Alanjary, Mohammad ;
Fetter, Artem ;
Terlouw, Barbara R. ;
Metcalf, William W. ;
Helfrich, Eric J. N. ;
van Wezel, Gilles P. ;
Medema, Marnix H. ;
Weber, Tilmann .
NUCLEIC ACIDS RESEARCH, 2023, 51 (W1) :W46-W50
[4]   UFBoot2: Improving the Ultrafast Bootstrap Approximation [J].
Diep Thi Hoang ;
Chernomor, Olga ;
von Haeseler, Arndt ;
Minh, Bui Quang ;
Le Sy Vinh .
MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (02) :518-522
[5]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[6]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[7]   TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY [J].
FITCH, WM .
SYSTEMATIC ZOOLOGY, 1971, 20 (04) :406-&
[8]   Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes [J].
Frank, Jeremy A. ;
Reich, Claudia I. ;
Sharma, Shobha ;
Weisbaum, Jon S. ;
Wilson, Brenda A. ;
Olsen, Gary J. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (08) :2461-2470
[9]   HALOBACTERIUM-VALLISMORTIS-SP-NOV - AMYLOLYTIC AND CARBOHYDRATE-METABOLIZING, EXTREMELY HALOPHILIC BACTERIUM [J].
GONZALEZ, C ;
GUTIERREZ, C ;
RAMIREZ, C .
CANADIAN JOURNAL OF MICROBIOLOGY, 1978, 24 (06) :710-715
[10]   DNA-DNA hybridization values and their relationship to whole-genome sequence similarities [J].
Goris, Johan ;
Konstantinidis, Konstantinos T. ;
Klappenbach, Joel A. ;
Coenye, Tom ;
Vandamme, Peter ;
Tiedje, James M. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :81-91