Synthesis, structural characterization, Hirshfeld surface and DFT calculations of 2-ethyl-2,4,5-trimethyl-2H-1,3-thiazine-6(3H)-thione

被引:1
|
作者
Castillo, Claudia [1 ]
Mora, Asiloe J. [1 ]
Guillen, Marilia [1 ]
Delgado-Nino, Pilar [2 ]
Araque, Cesar [3 ]
Avila, Edward [4 ]
Contreras, Ricardo R. [5 ]
Delgado, Gerzon E. [1 ]
机构
[1] Univ Los Andes, Lab Cristalog, Dept Quim, Fac Ciencias, Merida, Venezuela
[2] Univ Libre, Fac Ingn, Bogota, Colombia
[3] Univ Agr Ecuador, Fac Ciencias Agr, Guayaquil, Ecuador
[4] Univ Yachay Tech, Fac Ciencias Quim & Ingn, Urcuqul, Ecuador
[5] Univ Los Andes, Fac Ciencias, Dept Quim, Lab Organomet, Merida, Venezuela
关键词
1; 3-thiazine; Sulfur pro-ligand; Crystal structure; Hydrogen bonds; Hirshfeld surface; DFT calculations; HYDROGEN-BOND PATTERNS; X-RAY; DIFFRACTION; POTENTIALS; LIGAND;
D O I
10.1016/j.molstruc.2022.134640
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
2-Ethyl-2,4,5-trimethyl-2H-1,3-thiazine-6(3H)-thione ( 1 ) was synthesized from butanone and carbon disulfide and recrystallized from a 1:1 mixture of ethyl acetate-hexane using the slow solvent evapo-ration technique. MS, FT-IR, and NMR spectroscopy techniques allowed to confirm the skeleton struc-ture of ( 1 ), and its crystal structure was characterized by X-ray diffraction. The powder X-ray diffraction data confirm the phase purity of the crystalline sample. Single-crystal X-ray diffraction analysis indicated that this compound crystallizes in the monoclinic space group P21/n (N degrees 14), with unit cell parameters: a = 6.3710 (16) A, b = 11.537 (3) A, c = 14.292 (4) A, beta = 93.842 (6) degrees, V = 1048.1 (5) A3. Compound ( 1 ) displays a half-chair conformation and, in addition, has a chiral center that indicates the presence of a racemic mixture. X-ray results were compared with DFTB (density-functional tight-binding) theoretical calculations in the solid state, confirming delocalization of electron density in the S1C1C2C3N1 segment of the ring that alters bond distances. The crystalline packing is stabilized by hydrogen bonds of the type N1-H1 middotmiddotS1, which form infinite chains parallel to the b axis and are described by the graph-set symbol C(6). Finally, an analysis of the Hirshfeld surfaces of the compound, allowed to identify additional inter-actions of the type C-H middotmiddotmiddot pi. The most important contributions to the crystal packing correspond to the interactions H middotmiddot H, S middot H / H middotmiddot S and C middotmiddot H / H middotmiddot C with values of 59.8%; 32.20% and 6.40%; respectively.(c) 2022 Elsevier B.V. All rights reserved.
引用
收藏
页数:7
相关论文
共 50 条
  • [21] Structural study, spectroscopic characterization, thermal decomposition, Hirshfeld surface analysis, and antibacterial activity of a novel hybrid centrosymmetric material(C4H12N2)[Co(H2O)2(H2P2O7)2].2H2O
    Hidaoui, Safaa
    Hamdi, Najlaa
    Saadi, Mohamed
    El Omari, Mohamed
    Pui, Aurel
    El Bali, Brahim
    El Ammari, Lahcen
    Lachkar, Mohammed
    INORGANIC CHEMISTRY COMMUNICATIONS, 2025, 174
  • [22] Synthesis, molecular structure, Hirshfeld surface analysis, NCI-RDG, spectral characterization analysis, nonlinear optical properties, and in silico molecular docking of (E)-3-(3-(2-methoxyphenyl)-4-methylthiazol-2 (3H)-ylidene) benzo[4,5] imidazo [1,2-c] thiazole-1(3H)-thione
    Smati, Sabrina
    Djafri, Ahmed
    Menad, Karima
    Boukabcha, Nourdine
    Rahmani, Rachida
    Goudjil, Meriem
    Megrouss, Youcef
    Khaldi, Hafsa
    Dege, Necmi
    Chouaih, Abdelkader
    Djafri, Ayada
    JOURNAL OF MOLECULAR STRUCTURE, 2024, 1318
  • [23] Crystal structure and Hirshfeld surface analysis of ethyl (3E)-5-(4-chlorophenyl)-3-{[(4-chlorophenyl)formamido]imino}-7-methyl-2H,3H,5H-[1,3]thiazolo[3,2-a]pyrimidine-6-carboxylate
    Mohamed, Shaaban K.
    Mague, Joel T.
    Akkurt, Mehmet
    Alfayomy, Abdallah M.
    Abou Seri, Sahar M.
    Abdel-Raheem, Shaban A. A.
    Abd Ul-Malik, Mokhtar A.
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2022, 78 : 846 - +
  • [24] Structural study, Hirshfeld surface analysis, spectroscopic properties and DFT investigation of a new hybrid compound: (C6H10(NH3)2)3[CoCl4](Cl)4•3H2O
    Tounsi, Amal
    Elleuch, Slim
    Hamdi, Besma
    Zouari, Ridha
    Ben Salah, Abdelhamid
    JOURNAL OF MOLECULAR STRUCTURE, 2017, 1141 : 512 - 523
  • [25] Synthesis, PXRD structural determination, Hirshfeld surface analysis and DFT/TD-DFT investigation of 3N-ethyl-2N′-(2-ethylphenylimino) thiazolidin-4-one
    Belkafouf, Nour El Houda
    Baara, Fayssal Triki
    Altomare, Angela
    Rizzi, Rosanna
    Chouaih, Abdelkader
    Djafri, Ayada
    Hamzaoui, Fodil
    JOURNAL OF MOLECULAR STRUCTURE, 2019, 1189 : 8 - 20
  • [26] Characterization, molecular modeling and antimicrobial activity of metal complexes of tridentate Schiff base derived from 5-acetyl-4-hydroxy-2H-1,3-thiazine-2,6(3H)-dione and 2-aminophenol
    Adly, Omima M. I.
    SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2012, 95 : 483 - 490
  • [27] 5,5-Dichloro-6-hydroxydihydropyrimidine-2,4(1H,3H)-dione: molecular and crystal structure, Hirshfeld surface analysis and the new route for synthesis with Mg(KeO4)2 as a new catalyst
    Novikov, Anton P.
    Ryagin, Sergey N.
    Grigoriev, Mikhail S.
    Safonov, Alexey, V
    German, Konstantin E.
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2020, 76 : 1557 - +
  • [28] Synthesis, crystal structure, spectroscopic study and Hirshfeld surface analysis of [Ni(C6H8N2)3]Cl2.2(H2O) (1)
    Jbali, W.
    Selmi, W.
    Jouffret, L.
    Marzouki, R.
    Zid, M. F.
    JOURNAL OF MOLECULAR STRUCTURE, 2021, 1225
  • [29] X-ray Structural Analysis of 5-(4-pyridyl)-1,3,4-oxadiazole-2(3H)-thione
    Gao, Wei
    MOLECULAR CRYSTALS AND LIQUID CRYSTALS, 2015, 623 (01) : 194 - 198
  • [30] Synthesis, X-Ray Diffraction, DFT and Hirshfeld Surface Studies of 9-(4-Hydroxyphenyl-Tetramethyl-Hexahydro-1H-Xanthene-1,8(2H)-Dione
    Fatima, Aysha
    Khanum, Ghazala
    Sharma, Arun
    Siddiqui, Nazia
    Butcher, Ray J.
    Srivastava, Sanjay Kumar
    Javed, Saleem
    POLYCYCLIC AROMATIC COMPOUNDS, 2023, 43 (08) : 6953 - 6976