Synthesis, structural characterization, Hirshfeld surface and DFT calculations of 2-ethyl-2,4,5-trimethyl-2H-1,3-thiazine-6(3H)-thione

被引:1
作者
Castillo, Claudia [1 ]
Mora, Asiloe J. [1 ]
Guillen, Marilia [1 ]
Delgado-Nino, Pilar [2 ]
Araque, Cesar [3 ]
Avila, Edward [4 ]
Contreras, Ricardo R. [5 ]
Delgado, Gerzon E. [1 ]
机构
[1] Univ Los Andes, Lab Cristalog, Dept Quim, Fac Ciencias, Merida, Venezuela
[2] Univ Libre, Fac Ingn, Bogota, Colombia
[3] Univ Agr Ecuador, Fac Ciencias Agr, Guayaquil, Ecuador
[4] Univ Yachay Tech, Fac Ciencias Quim & Ingn, Urcuqul, Ecuador
[5] Univ Los Andes, Fac Ciencias, Dept Quim, Lab Organomet, Merida, Venezuela
关键词
1; 3-thiazine; Sulfur pro-ligand; Crystal structure; Hydrogen bonds; Hirshfeld surface; DFT calculations; HYDROGEN-BOND PATTERNS; X-RAY; DIFFRACTION; POTENTIALS; LIGAND;
D O I
10.1016/j.molstruc.2022.134640
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
2-Ethyl-2,4,5-trimethyl-2H-1,3-thiazine-6(3H)-thione ( 1 ) was synthesized from butanone and carbon disulfide and recrystallized from a 1:1 mixture of ethyl acetate-hexane using the slow solvent evapo-ration technique. MS, FT-IR, and NMR spectroscopy techniques allowed to confirm the skeleton struc-ture of ( 1 ), and its crystal structure was characterized by X-ray diffraction. The powder X-ray diffraction data confirm the phase purity of the crystalline sample. Single-crystal X-ray diffraction analysis indicated that this compound crystallizes in the monoclinic space group P21/n (N degrees 14), with unit cell parameters: a = 6.3710 (16) A, b = 11.537 (3) A, c = 14.292 (4) A, beta = 93.842 (6) degrees, V = 1048.1 (5) A3. Compound ( 1 ) displays a half-chair conformation and, in addition, has a chiral center that indicates the presence of a racemic mixture. X-ray results were compared with DFTB (density-functional tight-binding) theoretical calculations in the solid state, confirming delocalization of electron density in the S1C1C2C3N1 segment of the ring that alters bond distances. The crystalline packing is stabilized by hydrogen bonds of the type N1-H1 middotmiddotS1, which form infinite chains parallel to the b axis and are described by the graph-set symbol C(6). Finally, an analysis of the Hirshfeld surfaces of the compound, allowed to identify additional inter-actions of the type C-H middotmiddotmiddot pi. The most important contributions to the crystal packing correspond to the interactions H middotmiddot H, S middot H / H middotmiddot S and C middotmiddot H / H middotmiddot C with values of 59.8%; 32.20% and 6.40%; respectively.(c) 2022 Elsevier B.V. All rights reserved.
引用
收藏
页数:7
相关论文
共 31 条
[1]  
Allen F.H., 2006, Int. Tables Crystallogr, VC, P790, DOI [DOI 10.1107/97809553602060000621, 10.1107/97809553602060000621]
[2]   TABLES OF BOND LENGTHS DETERMINED BY X-RAY AND NEUTRON-DIFFRACTION .1. BOND LENGTHS IN ORGANIC-COMPOUNDS [J].
ALLEN, FH ;
KENNARD, O ;
WATSON, DG ;
BRAMMER, L ;
ORPEN, AG ;
TAYLOR, R .
JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1987, (12) :S1-S19
[3]  
[Anonymous], 2004, RIGAKU MSCCRYSTALSTR
[4]   Molecular and crystalline structure of cycloheptanespiro-3′(4′H)-6′,7′,8′,9′-tetrahydrocyclohexa[b][1,4]thiazole-2′(5′H)-thione from powder synchrotron X-ray diffraction data [J].
Avila, Edward E. ;
Mora, Asiloe J. ;
Delgado, Gerzon E. ;
Contreras, Ricardo R. ;
Fitch, Andrew N. ;
Brunelli, Michela .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS, 2008, 64 :217-222
[5]   Structure and conformational analysis of a bidentate pro-ligand, C21H34N2S2, from powder synchrotron diffraction data and solid-state DFTB calculations [J].
Avila, Edward E. ;
Mora, Asiloe J. ;
Delgado, Gerzon E. ;
Contreras, Ricardo R. ;
Rincon, Luis ;
Fitch, Andrew N. ;
Brunelli, Michela .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2009, 65 :639-646
[6]   SYNTHESIS AND ANTIFUNGAL PROPERTIES OF DITHIOCARBOXYLIC ACID DERIVAT IVES .2. NOVEL PREPARATION OF 2-ALKYLAMINO- 1-CYCLOPENTENE-1-DITHIOCARBOXYLIC ACIDS AND SOME OF THEIR DERIVATIVES [J].
BORDAS, B ;
BERENCSI, P ;
SOHAR, P ;
MATOLCSY, G .
JOURNAL OF ORGANIC CHEMISTRY, 1972, 37 (11) :1727-&
[7]   STRUCTURE OF 5,6,7,8-TETRAHYDRO-4H-3,1-BENZOTHIAZINE-2(1H)-SPIROCYCLOHEXANE-4-THIONE, C13H19NS2 [J].
CASTINEIRASCAMPOS, A ;
RUIZAMIL, A ;
MARTINEZCARRERA, S ;
GARCIABLANCO, S .
ACTA CRYSTALLOGRAPHICA SECTION C-CRYSTAL STRUCTURE COMMUNICATIONS, 1983, 39 (AUG) :1094-1096
[8]   Intramolecular hydrogen bonding in dibenzyl 2,2′-(propane-1,3-diyldiimino)bis(cyclopent-1-ene-1-carbodithioate) [J].
Contreras, RR ;
Fontal, B ;
Romero, I ;
Atencio, R ;
Briceño, A .
ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2006, 62 :O205-O208
[9]   Synthesis of copper, nickel and cobalt complexes containing a new N2S2 ligand:: benzyl-N,N′-alkylbis(2-amino-1-cyclopentencarbodithioate) [J].
Contreras, RR ;
Fontal, B ;
Bahsas, A ;
Suárez, T ;
Reyes, M ;
Bellandi, F ;
Nava, F ;
Cancines, P .
TRANSITION METAL CHEMISTRY, 2004, 29 (01) :51-55
[10]   Synthesis of methyl-2,4-bis(cyclohexane)dispiro-1,2,3,4,4a,5,6,7-octahydro-(1H,3H)quinazoline-8-carbodithioate derived from cyclohexanone in one step [J].
Contreras, RR ;
Fontal, B ;
Bahsas, A ;
Reyes, M ;
Suárez, T ;
Bellandi, F .
JOURNAL OF HETEROCYCLIC CHEMISTRY, 2001, 38 (05) :1223-1225