Identification of GINS1 as a potential prognostic biomarker for sarcoma using bioinformatic analysis

被引:1
作者
Zhao, Huanhuan [1 ]
He, Xiaoxia [2 ]
Ma, Zhanbei [1 ]
机构
[1] Baoding First Cent Hosp, Dept Orthoped, Baoding 071000, Peoples R China
[2] Baoding First Cent Hosp, Dept Digest Med, Baoding, Peoples R China
关键词
Bioinformatic analysis; prognostic biomarker; sarcoma; GINS1; CANCER; EXPRESSION; COMPLEX;
D O I
10.21037/tcr-23-524
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: The GINS complex is related to cancer development, invasion, and poor prognosis in multiple tumors. In the study, we attempted to investigate the prognostic value of GINS1 in sarcoma patients.Methods: We analyzed GINS1 expression using Tumor IMmune Estimation Resource (TIMER) 2.0, Gene Expression Omnibus (GEO; GSE21122, GSE39262, and GSE21050), and The Cancer Genome Atlas (TCGA) databases. The prognostic value of GINS1 was explored using the survival and survminer packages of R. Genetic alteration analysis was investigated using cBioPortal. The Cell-type Identification by Estimating Relative Subsets of RNA Transcripts (CIBERSORT) R script was used for the immunocyte infiltration analysis. MicroRNAs (miRNAs) targeting GINS1 were predicted using GEO (GSE69470) and MicroRNA Target Prediction Database (miRDB). Results: We found that GINS1 was overexpressed in sarcoma, especially in metastatic samples, and was associated with a worse prognosis. High GINS1 expression was a poor prognostic indicator for sarcoma patients. Moreover, GINS1 alteration was associated with worse survival of sarcoma patients. Immune infiltration analysis indicated that GINS1 expression was correlated with the infiltration of M0 and M2 macrophages in sarcoma. Finally, the miRNA hsa-miR-376a-3p was identified to potentially regulate GINS1 in sarcoma.Conclusions: These results indicate that GINS1 may be a promising prognostic biomarker and therapeutic target for sarcoma.
引用
收藏
页码:1021 / 1032
页数:12
相关论文
共 40 条
[1]   NCBI GEO: archive for functional genomics data sets-update [J].
Barrett, Tanya ;
Wilhite, Stephen E. ;
Ledoux, Pierre ;
Evangelista, Carlos ;
Kim, Irene F. ;
Tomashevsky, Maxim ;
Marshall, Kimberly A. ;
Phillippy, Katherine H. ;
Sherman, Patti M. ;
Holko, Michelle ;
Yefanov, Andrey ;
Lee, Hyeseung ;
Zhang, Naigong ;
Robertson, Cynthia L. ;
Serova, Nadezhda ;
Davis, Sean ;
Soboleva, Alexandra .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D991-D995
[2]   Studies on Human DNA Polymerase ε and GINS Complex and Their Role in DNA Replication [J].
Bermudez, Vladimir P. ;
Farina, Andrea ;
Raghavan, Vineetha ;
Tappin, Inger ;
Hurwitz, Jerard .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2011, 286 (33) :28963-28977
[3]   Drug sensitivity testing on patient-derived sarcoma cells predicts patient response to treatment and identifies c-Sarc inhibitors as active drugs for translocation sarcomas [J].
Brodin, Bertha A. ;
Wennerberg, Krister ;
Lidbrink, Elisabet ;
Brosjo, Otte ;
Potdar, Swapnil ;
Wilson, Jennifer N. ;
Ma, Limin ;
Moens, Lotte N. ;
Hesla, Asle ;
Porovic, Edvin ;
Bernhardsson, Edvin ;
Papakonstantinou, Antroula ;
Bauer, Henrik ;
Tsagkozis, Panagiotis ;
von Sivers, Karin ;
Wejde, Johan ;
Ostling, Paivi ;
Kallioniemi, Olli ;
Stragliotto, Christina Linder .
BRITISH JOURNAL OF CANCER, 2019, 120 (04) :435-443
[4]   The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data [J].
Cerami, Ethan ;
Gao, Jianjiong ;
Dogrusoz, Ugur ;
Gross, Benjamin E. ;
Sumer, Selcuk Onur ;
Aksoy, Buelent Arman ;
Jacobsen, Anders ;
Byrne, Caitlin J. ;
Heuer, Michael L. ;
Larsson, Erik ;
Antipin, Yevgeniy ;
Reva, Boris ;
Goldberg, Arthur P. ;
Sander, Chris ;
Schultz, Nikolaus .
CANCER DISCOVERY, 2012, 2 (05) :401-404
[5]   Identification of lncRNA/circRNA-miRNA-mRNA ceRNA Network as Biomarkers for Hepatocellular Carcinoma [J].
Chen, Shanshan ;
Zhang, Yongchao ;
Ding, Xiaoyan ;
Li, Wei .
FRONTIERS IN GENETICS, 2022, 13
[6]   Knockdown of GINS2 inhibits proliferation and promotes apoptosis through the p53/GADD45A pathway in non-small-cell lung cancer [J].
Chi, Feng ;
Wang, Zhou ;
Li, Yuzhu ;
Chang, Ning .
BIOSCIENCE REPORTS, 2020, 40
[7]   Tumor-associated macrophages and macrophage-related immune checkpoint expression in sarcomas [J].
Dancsok, Amanda R. ;
Gao, Dongxia ;
Lee, Anna F. ;
Steigen, Sonja Eriksson ;
Blay, Jean-Yves ;
Thomas, David M. ;
Maki, Robert G. ;
Nielsen, Torsten O. ;
Demicco, Elizabeth G. .
ONCOIMMUNOLOGY, 2020, 9 (01)
[8]   Advances in sarcoma diagnostics and treatment [J].
Dancsok, Amanda R. ;
Asleh-Aburaya, Karama ;
Nielsen, Torsten O. .
ONCOTARGET, 2017, 8 (04) :7068-7093
[9]  
Ferguson JL, 2018, AM FAM PHYSICIAN, V98, P205
[10]   Soft-tissue sarcoma in adults: An update on the current state of histiotype-specific management in an era of personalized medicine [J].
Gamboa, Adriana C. ;
Gronchi, Alessandro ;
Cardona, Kenneth .
CA-A CANCER JOURNAL FOR CLINICIANS, 2020, 70 (03) :200-229