Targeting Monoamine Oxidase B for the Treatment of Alzheimer's and Parkinson's Diseases Using Novel Inhibitors Identified Using an Integrated Approach of Machine Learning and Computer-Aided Drug Design

被引:7
作者
Siddiqui, Arif Jamal [1 ]
Jahan, Sadaf [2 ]
Siddiqui, Maqsood Ahmed [3 ]
Khan, Andleeb [4 ]
Alshahrani, Mohammed Merae [5 ]
Badraoui, Riadh [1 ]
Adnan, Mohd [1 ]
机构
[1] Univ Hail, Coll Sci, Dept Biol, POB 2440, Hail, Saudi Arabia
[2] Majmaah Univ, Coll Appl Med Sci, Dept Med Lab Sci, Al Majmaah 11952, Saudi Arabia
[3] King Saud Univ, Coll Sci, Dept Zool, POB 2455, Riyadh 11451, Saudi Arabia
[4] Jazan Univ, Coll Pharm, Dept Pharmacol & Toxicol, Jazan 45142, Saudi Arabia
[5] Najran Univ, Fac Appl Med Sci, Dept Clin Lab Sci, Najran 61441, Saudi Arabia
关键词
CADD; computer biology; Alzheimer's; dynamics; pharmacophore; free energy calculation; docking; SELECTIVE INHIBITORS; CLASSIFICATION; DERIVATIVES; SAFINAMIDE; DOCKING; BINDING; POTENT; GLIDE;
D O I
10.3390/math11061464
中图分类号
O1 [数学];
学科分类号
0701 ; 070101 ;
摘要
Neurological disorders are disorders characterized by progressive loss of neurons leading to disability. Neurotransmitters such as nor-adrenaline, dopamine, and serotonin are partially regulated by the enzyme monoamine oxidase (MAO). Treatments for conditions like Alzheimer's, Parkinson's, anxiety, and depression involve the use of MAOIs. To target MAO enzyme inhibition, various scaffolds are prepared and evaluated, including modified coumarins, chromone carboxylic acid substituents, pyridazine derivatives, and indolylmethylamine. The research presented here focuses on combining different computational tools to find new inhibitors of the MAO-B protein. We discovered 5 possible chemical inhibitors using the above computational techniques. We found five molecular inhibitors with high binding affinity using computational methods. These five molecules showed a high binding affinity; they are -10.917, -10.154, -10.223, -10.858, and -9.629 Kcal/mol, respectively. Additionally, the selected inhibitors were further examined by in vitro activity, and their binding affinity was confirmed using an enzyme-based assay. In summary, the computational studies performed here using molecular dynamics and free energy calculations can also be used to design and predict highly potent derivatives as MAO-B inhibitors, and these top inhibitors help in the development of novel drugs for neurological diseases such as Alzheimer's and Parkinson's.
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页数:17
相关论文
共 65 条
[1]   Dynamic Extraction of Initial Behavior for Evasive Malware Detection [J].
Aboaoja, Faitouri A. ;
Zainal, Anazida ;
Ali, Abdullah Marish ;
Ghaleb, Fuad A. ;
Alsolami, Fawaz Jaber ;
Rassam, Murad A. .
MATHEMATICS, 2023, 11 (02)
[2]   Synthesis, monoamine oxidase inhibitory activity and computational study of novel isoxazole derivatives as potential antiparkinson agents [J].
Agrawal, Neetu ;
Mishra, Pradeep .
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2019, 79 :63-72
[3]  
[Anonymous], 2016, SCHROD REL 2017 3 LI
[4]  
[Anonymous], 2021, 2022 3 S R MACROMODE
[5]  
[Anonymous], 2017, SCHROD REL 2017 3 QI
[6]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[7]   Structures of human monoamine oxidase B complexes with selective noncovalent inhibitors: Safinamide and coumarin analogs [J].
Binda, Claudia ;
Wang, Jin ;
Pisani, Leonardo ;
Caccia, Carla ;
Carotti, Angelo ;
Salvati, Patricia ;
Edmondson, Dale E. ;
Mattevi, Andrea .
JOURNAL OF MEDICINAL CHEMISTRY, 2007, 50 (23) :5848-5852
[8]   Potentiation of Ligand Binding through Cooperative Effects in Monoamine Oxidase B [J].
Bonivento, Daniele ;
Milczek, Erika M. ;
McDonald, G. Reid ;
Binda, Claudia ;
Holt, Andrew ;
Edmondson, Dale E. ;
Mattevi, Andrea .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (47) :36849-36856
[9]   Knowledge based identification of MAO-B selective inhibitors using pharmacophore and structure based virtual screening models [J].
Boppana, Kiran ;
Dubey, P. K. ;
Jagarlapudi, Sarma A. R. P. ;
Vadivelan, S. ;
Rambabu, G. .
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2009, 44 (09) :3584-3590
[10]   Monoamine oxidase inactivation: From pathophysiology to therapeutics [J].
Bortolato, Marco ;
Chen, Kevin ;
Shih, Jean C. .
ADVANCED DRUG DELIVERY REVIEWS, 2008, 60 (13-14) :1527-1533