Integrative profiling analysis reveals prognostic significance, molecular characteristics, and tumor immunity of angiogenesis-related genes in soft tissue sarcoma

被引:1
作者
Liu, Binfeng [1 ,2 ]
Li, Chenbei [1 ,2 ]
Feng, Chengyao [1 ,2 ]
Wang, Hua [1 ,2 ]
Zhang, Haixia [3 ]
Tu, Chao [1 ,2 ]
He, Shasha [3 ]
Li, Zhihong [1 ,2 ]
机构
[1] Cent South Univ, Dept Orthopaed, Xiangya Hosp 2, Changsha, Hunan, Peoples R China
[2] Cent South Univ, Hunan Key Lab Tumor Models & Individualized Med, Xiangya Hosp 2, Changsha, Hunan, Peoples R China
[3] Cent South Univ, Dept Oncol, Xiangya Hosp 2, Changsha, Hunan, Peoples R China
基金
中国国家自然科学基金;
关键词
soft tissue sarcoma; angiogenesis; prognosis; immune landscape; immunotherapy; CANCER; PROGRESSION; METASTASIS; PROTEIN; GROWTH; SRPK1; CELLS;
D O I
10.3389/fimmu.2023.1178436
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
BackgroundSoft tissue sarcoma (STS) is a class of malignant tumors originating from mesenchymal stroma with a poor prognosis. Accumulating evidence has proved that angiogenesis is an essential hallmark of tumors. Nevertheless, there is a paucity of comprehensive research exploring the association of angiogenesis-related genes (ARGs) with STS. MethodsThe ARGs were extracted from previous literature, and the differentially expressed ARGs were screened for subsequent analysis. Next, the least absolute shrinkage and selection operator (LASSO) and Cox regression analyses were conducted to establish the angiogenesis-related signature (ARSig). The predictive performance of the novel ARSig was confirmed using internal and external validation, subgroup survival, and independent analysis. Additionally, the association of the ARSig with the tumor immune microenvironment, tumor mutational burden (TMB), and therapeutic response in STS were further investigated. Notably, we finally conducted in vitro experiments to verify the findings from the bioinformatics analysis. ResultsA novel ARSig is successfully constructed and validated. The STS with a lower ARSig risk score in the training cohort has an improved prognosis. Also, consistent results were observed in the internal and external cohorts. The receiver operating characteristic (ROC) curve, subgroup survival, and independent analysis further indicate that the novel ARSig is a promising independent prognostic predictor for STS. Furthermore, it is proved that the novel ARSig is relevant to the immune landscape, TMB, immunotherapy, and chemotherapy sensitivity in STS. Encouragingly, we also validate that the signature ARGs are significantly dysregulated in STS, and ARDB2 and SRPK1 are closely connected with the malignant progress of STS cells. ConclusionIn sum, we construct a novel ARSig for STS, which could act as a promising prognostic factor for STS and give a strategy for future clinical decisions, immune landscape, and personalized treatment of STS.
引用
收藏
页数:18
相关论文
共 58 条
[41]   Patterns of care and outcomes of patients with METAstatic soft tissue SARComa in a real-life setting: the METASARC observational study [J].
Savina, Marion ;
Le Cesne, Axel ;
Blay, Jean-Yves ;
Ray-Coquard, Isabelle ;
Mir, Olivier ;
Toulmonde, Maud ;
Cousin, Sophie ;
Terrier, Philippe ;
Ranchere-Vince, Dominique ;
Meeus, Pierre ;
Stoeckle, Eberhard ;
Honore, Charles ;
Sargos, Paul ;
Sunyach, Marie-Pierre ;
Le Pechoux, Cecile ;
Giraud, Antoine ;
Bellera, Carine ;
Le Loarer, Francois ;
Italiano, Antoine .
BMC MEDICINE, 2017, 15
[42]   Management of tumor growth and angiogenesis in triple-negative breast cancer by using redox nanoparticles [J].
Shashni, Babita ;
Nishikawa, Yuji ;
Nagasaki, Yukio .
BIOMATERIALS, 2021, 269
[43]   Olfactomedin 1 negatively regulates NF-B signalling and suppresses the growth and metastasis of colorectal cancer cells [J].
Shi, Wei ;
Ye, Zhihua ;
Zhuang, Li ;
Li, Yingchang ;
Shuai, Wendi ;
Zuo, Zhixiang ;
Mao, Xueli ;
Liu, Ranyi ;
Wu, Jiangxue ;
Chen, Shuai ;
Huang, Wenlin .
JOURNAL OF PATHOLOGY, 2016, 240 (03) :352-365
[44]   Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [J].
Subramanian, A ;
Tamayo, P ;
Mootha, VK ;
Mukherjee, S ;
Ebert, BL ;
Gillette, MA ;
Paulovich, A ;
Pomeroy, SL ;
Golub, TR ;
Lander, ES ;
Mesirov, JP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (43) :15545-15550
[45]   Intratumor Heterogeneity: Evolution through Space and Time [J].
Swanton, Charles .
CANCER RESEARCH, 2012, 72 (19) :4875-4882
[46]   PLA2G10 facilitates the cell-cycle progression of soft tissue leiomyosarcoma cells at least by elevating cyclin E1/CDK2 expression [J].
Tan, Gang ;
Zhang, Guang-Yan ;
Xu, Jing ;
Kang, Cheng-Wei ;
Yan, Zhao-Kui ;
Lei, Mei ;
Pu, Xiao-Bing ;
Dong, Chang-Chao .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2020, 527 (02) :525-531
[47]   N6-Methylandenosine-Related lncRNAs Are Potential Biomarkers for Predicting the Overall Survival of Lower-Grade Glioma Patients [J].
Tu, Zewei ;
Wu, Lei ;
Wang, Peng ;
Hu, Qing ;
Tao, Chuming ;
Li, Kuangxun ;
Huang, Kai ;
Zhu, Xingen .
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2020, 8
[48]   Tumor angiogenesis and vascular normalization: alternative therapeutic targets [J].
Viallard, Claire ;
Larrivee, Bruno .
ANGIOGENESIS, 2017, 20 (04) :409-426
[49]   Angiogenesis-Related Gene Signature-Derived Risk Score for Glioblastoma: Prospects for Predicting Prognosis and Immune Heterogeneity in Glioblastoma [J].
Wang, Gang ;
Hu, Jin-Qu ;
Liu, Ji-Yuan ;
Zhang, Xiao-Mei .
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2022, 10
[50]   AHNAK2 is a Novel Prognostic Marker and Oncogenic Protein for Clear Cell Renal Cell Carcinoma [J].
Wang, Minglei ;
Li, Xuefeng ;
Zhang, Jin ;
Yang, Qiong ;
Chen, Wenqi ;
Jin, Weilin ;
Huang, Yi-Ran ;
Yang, Ru ;
Gao, Wei-Qiang .
THERANOSTICS, 2017, 7 (05) :1100-1113