Integrative profiling analysis reveals prognostic significance, molecular characteristics, and tumor immunity of angiogenesis-related genes in soft tissue sarcoma

被引:1
作者
Liu, Binfeng [1 ,2 ]
Li, Chenbei [1 ,2 ]
Feng, Chengyao [1 ,2 ]
Wang, Hua [1 ,2 ]
Zhang, Haixia [3 ]
Tu, Chao [1 ,2 ]
He, Shasha [3 ]
Li, Zhihong [1 ,2 ]
机构
[1] Cent South Univ, Dept Orthopaed, Xiangya Hosp 2, Changsha, Hunan, Peoples R China
[2] Cent South Univ, Hunan Key Lab Tumor Models & Individualized Med, Xiangya Hosp 2, Changsha, Hunan, Peoples R China
[3] Cent South Univ, Dept Oncol, Xiangya Hosp 2, Changsha, Hunan, Peoples R China
基金
中国国家自然科学基金;
关键词
soft tissue sarcoma; angiogenesis; prognosis; immune landscape; immunotherapy; CANCER; PROGRESSION; METASTASIS; PROTEIN; GROWTH; SRPK1; CELLS;
D O I
10.3389/fimmu.2023.1178436
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
BackgroundSoft tissue sarcoma (STS) is a class of malignant tumors originating from mesenchymal stroma with a poor prognosis. Accumulating evidence has proved that angiogenesis is an essential hallmark of tumors. Nevertheless, there is a paucity of comprehensive research exploring the association of angiogenesis-related genes (ARGs) with STS. MethodsThe ARGs were extracted from previous literature, and the differentially expressed ARGs were screened for subsequent analysis. Next, the least absolute shrinkage and selection operator (LASSO) and Cox regression analyses were conducted to establish the angiogenesis-related signature (ARSig). The predictive performance of the novel ARSig was confirmed using internal and external validation, subgroup survival, and independent analysis. Additionally, the association of the ARSig with the tumor immune microenvironment, tumor mutational burden (TMB), and therapeutic response in STS were further investigated. Notably, we finally conducted in vitro experiments to verify the findings from the bioinformatics analysis. ResultsA novel ARSig is successfully constructed and validated. The STS with a lower ARSig risk score in the training cohort has an improved prognosis. Also, consistent results were observed in the internal and external cohorts. The receiver operating characteristic (ROC) curve, subgroup survival, and independent analysis further indicate that the novel ARSig is a promising independent prognostic predictor for STS. Furthermore, it is proved that the novel ARSig is relevant to the immune landscape, TMB, immunotherapy, and chemotherapy sensitivity in STS. Encouragingly, we also validate that the signature ARGs are significantly dysregulated in STS, and ARDB2 and SRPK1 are closely connected with the malignant progress of STS cells. ConclusionIn sum, we construct a novel ARSig for STS, which could act as a promising prognostic factor for STS and give a strategy for future clinical decisions, immune landscape, and personalized treatment of STS.
引用
收藏
页数:18
相关论文
共 58 条
[21]   The tumor immune microenvironment and immune-related signature predict the chemotherapy response in patients with osteosarcoma [J].
He, Lijiang ;
Yang, Hainan ;
Huang, Jingshan .
BMC CANCER, 2021, 21 (01)
[22]   Vascular endothelial growth factor and angiogenesis [J].
Hoeben, A ;
Landuyt, B ;
Highley, MS ;
Wildiers, H ;
Van Oosterom, AT ;
De Bruijn, EA .
PHARMACOLOGICAL REVIEWS, 2004, 56 (04) :549-580
[23]   How to build and interpret a nomogram for cancer prognosis [J].
Iasonos, Alexia ;
Schrag, Deborah ;
Raj, Ganesh V. ;
Panageas, Katherine S. .
JOURNAL OF CLINICAL ONCOLOGY, 2008, 26 (08) :1364-1370
[24]   Cancer statistics, 2007 [J].
Jemal, Ahmedin ;
Siegel, Rebecca ;
Ward, Elizabeth ;
Murray, Taylor ;
Xu, Jiaquan ;
Thun, Michael J. .
CA-A CANCER JOURNAL FOR CLINICIANS, 2007, 57 (01) :43-66
[25]   Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response [J].
Jiang, Peng ;
Gu, Shengqing ;
Pan, Deng ;
Fu, Jingxin ;
Sahu, Avinash ;
Hu, Xihao ;
Li, Ziyi ;
Traugh, Nicole ;
Bu, Xia ;
Li, Bo ;
Liu, Jun ;
Freeman, Gordon J. ;
Brown, Myles A. ;
Wucherpfennig, Kai W. ;
Liu, X. Shirley .
NATURE MEDICINE, 2018, 24 (10) :1550-+
[26]   Time-dependent ROC curve analysis in medical research: current methods and applications [J].
Kamarudin, Adina Najwa ;
Cox, Trevor ;
Kolamunnage-Dona, Ruwanthi .
BMC MEDICAL RESEARCH METHODOLOGY, 2017, 17
[27]   FILIP1L Loss Is a Driver of Aggressive Mucinous Colorectal Adenocarcinoma and Mediates Cytokinesis Defects through PFDN1 [J].
Kwon, Mijung ;
Rubio, Genesaret ;
Nolan, Nicholas ;
Auteri, Peter ;
Volmar, Jean Arly ;
Adem, Asha ;
Javidian, Parisa ;
Zhou, Zhongren ;
Verzi, Michael P. ;
Pine, Sharon R. ;
Libutti, Steven K. .
CANCER RESEARCH, 2021, 81 (21) :5523-5539
[28]   Filamin A interacting protein 1-like as a therapeutic target in cancer [J].
Kwon, Mijung ;
Libutti, Steven K. .
EXPERT OPINION ON THERAPEUTIC TARGETS, 2014, 18 (12) :1435-1447
[29]   The overexpression of Tipe2 in CRC cells suppresses survival while endogenous Tipe2 accelerates AOM/DSS induced-tumor initiation [J].
Li, Yan ;
Zhang, Na ;
Ma, Chao ;
Xu, Wenwen ;
Jin, Guiyuan ;
Zheng, Yi ;
Zhang, Lei ;
Liu, Bingyu ;
Gao, Chengjiang ;
Liu, Suxia .
CELL DEATH & DISEASE, 2021, 12 (11)
[30]   SRPK1 facilitates tumor cell growth via modulating the small nucleolar RNA expression in gastric cancer [J].
Li, Yandong ;
Yu, Shijun ;
Wang, Xiao ;
Ye, Xiaojuan ;
He, Bin ;
Quan, Ming ;
Gao, Yong .
JOURNAL OF CELLULAR PHYSIOLOGY, 2019, 234 (08) :13582-13591