Diverse methods of reducing and confirming false-positive results of loop-mediated isothermal amplification assays: A review

被引:53
作者
Kim, So-Hee [1 ]
Lee, So-Young [1 ]
Kim, Unji [1 ]
Oh, Se-Wook [1 ]
机构
[1] Kookmin Univ, Dept Food & Nutr, Seoul 02727, South Korea
基金
新加坡国家研究基金会;
关键词
Loop-mediated isothermal amplification; False; -positive; Nonspecific amplification; Primer dimer; DNAzyme; Gold nanoparticles; URACIL-DNA-GLYCOSYLASE; NUCLEIC-ACID; RAPID DETECTION; COLORIMETRIC DETECTION; GOLD NANOPARTICLES; LAMP; CONTAMINATION; ELIMINATION; SENSITIVITY;
D O I
10.1016/j.aca.2023.341693
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Loop-mediated isothermal amplification (LAMP), a rapid and sensitive isothermal nucleic acid amplification method, is a promising alternative to other molecular amplification techniques due to its superior specificity and sensitivity. However, due to primer dimerization, LAMP results in nonspecific and nontemplate amplification. And during the amplification confirmation process, there is carry-over contamination. These factors can result in false-positive results that overestimate the amount of DNA, preventing accurate detection. This review outlined several techniques for reducing false-positive LAMP results before amplification and confirming false-positive results after amplification. Before the amplification step, DNA polymerase activity can be decreased with organic additives such as dimethyl sulfoxide, betaine, and pullulan to prevent nonspecific amplification. The enzyme uracil-DNA-glycosylase (UDG) can eliminate false-positive results caused by carry-over contamination, and the hot-start effect with gold nanoparticles can reduce nonspecific amplification. When confirming falsepositive results using clustered regularly interspaced short palindromic repeats, guide RNA accurately detects LAMP amplification, allowing differentiation from nonspecific amplification. By confirming amplification, the colorimetric change in the deoxyribozyme (DNAzyme) formed by the reaction of the G-quadruplex sequence of
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页数:9
相关论文
共 75 条
[1]   RETRACTED: Sensitive Visual Detection of AHPND Bacteria Using Loop-Mediated Isothermal Amplification Combined with DNA-Functionalized Gold Nanoparticles as Probes (Retracted Article) [J].
Arunrut, Narong ;
Kampeera, Jantana ;
Sirithammajak, Sarawut ;
Sanguanrut, Piyachat ;
Proespraiwong, Porranee ;
Suebsing, Rungkarn ;
Kiatpathomchai, Wansika .
PLOS ONE, 2016, 11 (03)
[2]   Miniaturized isothermal nucleic acid amplification, a review [J].
Asiello, Peter J. ;
Baeumner, Antje J. .
LAB ON A CHIP, 2011, 11 (08) :1420-1430
[3]   CRISPR-Cas-Integrated LAMP [J].
Atceken, Nazente ;
Yigci, Defne ;
Ozdalgic, Berin ;
Tasoglu, Savas .
BIOSENSORS-BASEL, 2022, 12 (11)
[4]  
Atkinson R., 2006, Morbidity and Mortality Weekly Report, V55, P1042
[5]   Lateral flow assays: Principles, designs and labels [J].
Bahadir, Elif Burcu ;
Sezginturk, Mustafa Kemal .
TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 2016, 82 :286-306
[6]   CUT-LAMP: Contamination-Free Loop-Mediated Isothermal Amplification Based on the CRISPR/Cas9 Cleavage [J].
Bao, Yijuan ;
Jiang, Yongzhong ;
Xiong, Erhu ;
Tian, Tian ;
Zhang, Zhenzhen ;
Lv, Jing ;
Li, Yang ;
Zhou, Xiaoming .
ACS SENSORS, 2020, 5 (04) :1082-1091
[7]   Biomedical Applications of Graphene and Graphene Oxide [J].
Chung, Chul ;
Kim, Young-Kwan ;
Shin, Dolly ;
Ryoo, Soo-Ryoon ;
Hong, Byung Hee ;
Min, Dal-Hee .
ACCOUNTS OF CHEMICAL RESEARCH, 2013, 46 (10) :2211-2224
[8]   Studies on primer-dimer formation in polymerase chain reaction (PCR) [J].
Das, S ;
Mohapatra, SC ;
Hsu, JT .
BIOTECHNOLOGY TECHNIQUES, 1999, 13 (10) :643-646
[9]   Nucleic acid amplification: Alternative methods of polymerase chain reaction [J].
Fakruddin, Md. ;
Bin Mannan, Khanjada Shahnewaj ;
Chowdhury, Abhijit ;
Mazumdar, Reaz Mohammad ;
Hossain, Md. Nur ;
Islam, Sumaiya ;
Chowdhury, Md. Alimuddin .
JOURNAL OF PHARMACY AND BIOALLIED SCIENCES, 2013, 5 (04) :245-252
[10]   An advanced uracil DNA glycosylase-supplemented loop-mediated isothermal amplification (UDG-LAMP) technique used in the sensitive and specific detection of Cryptosporidium parvum, Cryptosporidium hominis, and Cryptosporidium meleagridis in AIDS patients [J].
Fallahi, Shirzad ;
Moosavi, Seyedeh Fatemeh ;
Karimi, Azadeh ;
Chegeni, Ali Sharafi ;
Saki, Mohammad ;
Namdari, Parsa ;
Rashno, Mohammad Menati ;
Varzi, Ali Mohamad ;
Tarrahi, Mohammad Javad ;
Almasian, Mohammad .
DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, 2018, 91 (01) :6-12