Decoding the structural integrity and multifunctional role of Era protein in the survival of Mycobacterium tuberculosis H37Rv

被引:0
作者
Agarwal, Preeti [1 ,2 ]
Kumar, Ajit [1 ,2 ]
Meena, Laxman S. [1 ,2 ,3 ,4 ]
机构
[1] CSIR Inst Genom & Integrat Biol, AID, Delhi, India
[2] Acad Sci & Innovat Res AcSIR, CSIR HRDG, Ghaziabad, India
[3] CSIR Cent Drug Res Inst, Lucknow, India
[4] Acad Sci & Innovat Res AcSIR, CSIR Inst Genom & Integrat Biol, Mall Rd, Delhi 110007, India
关键词
Mycobacterium tuberculosis; tuberculosis; GTP; Era; 16s rRNA; ribosome; A; aeolicus; GTP-BINDING PROTEIN; GROWTH-RATE; WEB SERVER; 3' END; SEQUENCE; PREDICTION; STABILITY; DOMAIN; SUPERFAMILY; REFINEMENT;
D O I
10.1080/07391102.2024.2309332
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Era, a widely known GTP binding protein found in many organisms including prokaryotes and eukaryotes and plays a significant role in many fundamental cellular processes like cell growth, differentiation and signaling. In Mycobacterium tuberculosis (Mtb) H37Rv, Era protein had been proved as a GTPase protein but its structural and functional insights are still lacking. Through comparative analysis, structural modeling, docking and using various bioinformatic tools, a detailed investigation of Era was carried out to deduce the structure, function and residues involved in the activity of the protein. Intriguingly, docking results revealed high binding affinity of Era not only with GTP but also with ATP. Myristoylation modifications and phosphorylations on Era were predicted to possibly aid in regulating Era activity and localization; and also the role of Era in translation regulation was foreseen by showing its association with 16s rRNA. Moreover, point mutation of Era residues revealed the effect of W288G and K19G in highly destabilizing the protein structure and activity. Additionally, Era protein was docked with 25 GTPase/ATPase inhibitors, where, Dynasore inhibitor showed the highest affinity for the protein's GTP binding sites and can be used for further drug trials to inhibit growth of mycobacteria.
引用
收藏
页数:16
相关论文
共 69 条
  • [1] Comprehensive analysis of GTP cyclohydrolase I activity inMycobacterium tuberculosisH37Rv viain silicostudies
    Agarwal, Preeti
    Meena, Swati
    Meena, Laxman S.
    [J]. BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY, 2021, 68 (04) : 756 - 768
  • [2] Developments in peptide and amide synthesis
    Albericio, F
    [J]. CURRENT OPINION IN CHEMICAL BIOLOGY, 2004, 8 (03) : 211 - 221
  • [3] Evolution of Drug-Resistant Mycobacterium tuberculosis Strains and Their Adaptation to the Human Lung Environment
    Allue-Guardia, Anna
    Garcia, Juan I.
    Torrelles, Jordi B.
    [J]. FRONTIERS IN MICROBIOLOGY, 2021, 12
  • [4] [Anonymous], 2021, GLOB TUB REP
  • [5] UniProt: a hub for protein information
    Bateman, Alex
    Martin, Maria Jesus
    O'Donovan, Claire
    Magrane, Michele
    Apweiler, Rolf
    Alpi, Emanuele
    Antunes, Ricardo
    Arganiska, Joanna
    Bely, Benoit
    Bingley, Mark
    Bonilla, Carlos
    Britto, Ramona
    Bursteinas, Borisas
    Chavali, Gayatri
    Cibrian-Uhalte, Elena
    Da Silva, Alan
    De Giorgi, Maurizio
    Dogan, Tunca
    Fazzini, Francesco
    Gane, Paul
    Cas-tro, Leyla Garcia
    Garmiri, Penelope
    Hatton-Ellis, Emma
    Hieta, Reija
    Huntley, Rachael
    Legge, Duncan
    Liu, Wudong
    Luo, Jie
    MacDougall, Alistair
    Mutowo, Prudence
    Nightin-gale, Andrew
    Orchard, Sandra
    Pichler, Klemens
    Poggioli, Diego
    Pundir, Sangya
    Pureza, Luis
    Qi, Guoying
    Rosanoff, Steven
    Saidi, Rabie
    Sawford, Tony
    Shypitsyna, Aleksandra
    Turner, Edward
    Volynkin, Vladimir
    Wardell, Tony
    Watkins, Xavier
    Zellner, Hermann
    Cowley, Andrew
    Figueira, Luis
    Li, Weizhong
    McWilliam, Hamish
    [J]. NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) : D204 - D212
  • [6] BOURNE HR, 1991, NATURE, V349, P117, DOI 10.1038/349117a0
  • [7] THE GTPASE SUPERFAMILY - A CONSERVED SWITCH FOR DIVERSE CELL FUNCTIONS
    BOURNE, HR
    SANDERS, DA
    MCCORMICK, F
    [J]. NATURE, 1990, 348 (6297) : 125 - 132
  • [8] Britton RA, 1997, GENETICS, V145, P867
  • [9] Cell cycle arrest in era GTPase mutants:: a potential growth rate-regulated checkpoint in Escherichia coli
    Britton, RA
    Powell, BS
    Dasgupta, S
    Sun, Q
    Margolin, W
    Lupski, JR
    Court, DL
    [J]. MOLECULAR MICROBIOLOGY, 1998, 27 (04) : 739 - 750
  • [10] Characterization of mutations affecting the Escherichia coli essential GTPase era that suppress two temperature-sensitive dnaG alleles
    Britton, RA
    Powell, BS
    Court, DL
    Lupski, JR
    [J]. JOURNAL OF BACTERIOLOGY, 1997, 179 (14) : 4575 - 4582