The Role and Activity of SWI/SNF Chromatin Remodelers

被引:46
作者
Bieluszewski, Tomasz [1 ]
Prakash, Sandhan [1 ]
Roule, Thomas [1 ]
Wagner, Doris [1 ]
机构
[1] Univ Penn, Dept Biol, Philadelphia, PA 19104 USA
基金
美国国家科学基金会;
关键词
SWI/SNF ATPases; nucleosome; chromatin; remodeling; transcription factors; development; stimulus response; GENOME-WIDE ANALYSIS; ATPASE BRAHMA; ARABIDOPSIS-THALIANA; POLYCOMB REPRESSION; HISTONE-BINDING; CROSS-TALK; COMPLEX; TRANSCRIPTION; GENE; PROTEINS;
D O I
10.1146/annurev-arplant-102820-093218
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
SWITCH deficient SUCROSE NONFERMENTING (SWI/SNF) class chromatin remodeling complexes (CRCs) use the energy derived from ATP hydrolysis to facilitate access of proteins to the genomic DNA for transcription, replication, and DNA repair. Uniquely, SWI/SNF CRCs can both slide the histone octamer along the DNA or eject it from the DNA. Given their ability to change the chromatin status quo, SWI/SNF remodelers are critical for cell fate reprogramming with pioneer and other transcription factors, for responses to environmental challenges, and for disease prevention. Recent cryo-electron microscopy and mass spectrometry approaches have uncovered different subtypes of SWI/SNF complexes with unique properties and functions. At the same time, tethering or rapid depletion and inactivation of SWI/SNF have provided novel insight into SWI/SNF requirements for enhancer activity and into balancing chromatin compaction and accessibility in concert with Polycomb complexes. Given their importance, SWI/SNF recruitment to genomic locations by transcription factors and their biochemical activity is tightly controlled. This review focuses on recent advances in our understanding of SWI/SNF CRCs in animals and plants and discusses the multiple nuclear and biological roles of SWI/SNF CRCs and how SWI/SNF activity is altered by complex subunit composition, posttranslational modifications, and the chromatin context to support proper development and response to extrinsic cues.
引用
收藏
页码:139 / 163
页数:25
相关论文
共 151 条
[1]   Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes [J].
Alpsoy, Aktan ;
Dykhuizen, Emily C. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2018, 293 (11) :3892-3903
[2]   Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression [J].
Archacki, Rafal ;
Yatusevich, Ruslan ;
Buszewicz, Daniel ;
Krzyczmonik, Katarzyna ;
Patryn, Jacek ;
Iwanicka-Nowicka, Roksana ;
Biecek, Przemyslaw ;
Wilczynski, Bartek ;
Koblowska, Marta ;
Jerzmanowski, Andrzej ;
Swiezewski, Szymon .
NUCLEIC ACIDS RESEARCH, 2017, 45 (06) :3116-3129
[3]   BRAHMA ATPase of the SWI/SNF Chromatin Remodeling Complex Acts as a Positive Regulator of Gibberellin-Mediated Responses in Arabidopsis [J].
Archacki, Rafal ;
Buszewicz, Daniel ;
Sarnowski, Tomasz J. ;
Sarnowska, Elzbieta ;
Rolicka, Anna T. ;
Tohge, Takayuki ;
Fernie, Alisdair R. ;
Jikumaru, Yusuke ;
Kotlinski, Maciej ;
Iwanicka-Nowicka, Roksana ;
Kalisiak, Katarzyna ;
Patryn, Jacek ;
Halibart-Puzio, Joanna ;
Kamiya, Yuji ;
Davis, Seth J. ;
Koblowska, Marta K. ;
Jerzmanowski, Andrzej .
PLOS ONE, 2013, 8 (03)
[4]   Genetic analysis of functional redundancy of BRM ATPase and ATSWI3C subunits of Arabidopsis SWI/SNF chromatin remodelling complexes [J].
Archacki, Rafal ;
Sarnowski, Tomasz J. ;
Halibart-Puzio, Joanna ;
Brzeska, Katarzyna ;
Buszewicz, Daniel ;
Prymakowska-Bosak, Marta ;
Koncz, Csaba ;
Jerzmanowski, Andrzej .
PLANTA, 2009, 229 (06) :1281-1292
[5]   Structural insights into assembly and function of the RSC chromatin remodeling complex [J].
Baker, Richard W. ;
Reimer, Janice M. ;
Carman, Peter J. ;
Turegun, Bengi ;
Arakawa, Tsutomu ;
Dominguez, Roberto ;
Leschziner, Andres E. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2021, 28 (01) :71-80
[6]   SMARCA4 regulates gene expression and higher order chromatin structure in proliferating mammary epithelial cells [J].
Barutcu, A. Rasim ;
Lajoie, Bryan R. ;
Fritz, Andrew J. ;
McCord, Rachel P. ;
Nickerson, Jeffrey A. ;
van Wijnen, Andre J. ;
Lian, Jane B. ;
Stein, Janet L. ;
Dekker, Job ;
Stein, Gary S. ;
Imbalzano, Anthony N. .
GENOME RESEARCH, 2016, 26 (09) :1188-1201
[7]   Unique, shared, and redundant roles for the Arabidopsis SWI/SNF chromatin remodeling ATPases BRAHMA and SPLAYED [J].
Bezhani, Staver ;
Winter, Cara ;
Hershman, Steve ;
Wagner, John D. ;
Kennedy, John F. ;
Kwon, Chang Seob ;
Pfluger, Jennifer ;
Su, Yanhui ;
Wagner, Doris .
PLANT CELL, 2007, 19 (02) :403-416
[8]   AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex [J].
Bieluszewski, Tomasz ;
Galganski, Lukasz ;
Sura, Weronika ;
Bieluszewska, Anna ;
Abram, Mateusz ;
Ludwikow, Agnieszka ;
Ziolkowski, Piotr Andrzej ;
Sadowski, Jan .
BMC PLANT BIOLOGY, 2015, 15
[9]   Acute depletion of the ARID1A subunit of SWI/SNF complexes reveals distinct pathways for activation and repression of transcription [J].
Blumli, Seraina ;
Wiechens, Nicola ;
Wu, Meng-Ying ;
Singh, Vijender ;
Gierlinski, Marek ;
Schweikert, Gabriele ;
Gilbert, Nick ;
Naughton, Catherine ;
Sundaramoorthy, Ramasubramanian ;
Varghese, Joby ;
Gourlay, Robert ;
Soares, Renata ;
Clark, David ;
Owen-Hughes, Tom .
CELL REPORTS, 2021, 37 (05)
[10]   Cancer-Specific Retargeting of BAF Complexes by a Prion-like Domain [J].
Boulay, Gaylor ;
Sandoval, Gabriel J. ;
Riggi, Nicolo ;
Iyer, Sowmya ;
Buisson, Remi ;
Naigles, Beverly ;
Awad, Mary E. ;
Rengarajan, Shruthi ;
Volorio, Angela ;
McBride, Matthew J. ;
Broye, Liliane C. ;
Zou, Lee ;
Stamenkovic, Ivan ;
Kadoch, Cigall ;
Rivera, Miguel N. .
CELL, 2017, 171 (01) :163-+