Unified and Standardized Mass Spectrometry Data Processing in Python']Python Using spectrum_utils

被引：12

作者：

Bittremieux, Wout ^{[7
,8
]}

Levitsky, Lev ^{[1
]}

Pilz, Matteo ^{[2
]}

Sachsenberg, Timo ^{[2
]}

Huber, Florian ^{[3
]}

Wang, Mingxun ^{[4
]}

Dorrestein, Pieter C. ^{[5
,6
]}

机构：

[1] Russian Acad Sci, V L Talrose Inst Energy Problems Chem Phys, N N Semenov Fed Res Ctr Chem Phys, Moscow 119334, Russia

[2] Univ Tubingen, Inst Bioinformat & Med Informat, D-72076 Tubingen, Germany

[3] Univ Appl Sci Dusseldorf, Ctr Digitalisat & Digital, D-40476 Dusseldorf, Germany

[4] Univ Calif Riverside, Dept Comp Sci, Riverside, CA 92507 USA

[5] Univ Calif San Diego, Skaggs Sch Pharm & Pharmaceut Sci, La Jolla, CA 92093 USA

[6] Univ Calif San Diego, Collaborat Mass Spectrometry Innovat Ctr, La Jolla, CA 92093 USA

[7] Univ Antwerp, Dept Comp Sci, B-2020 Antwerp, Belgium

[8] Biomed Informat Network Antwerpen biomina, B-2020 Antwerp, Belgium

来源：

JOURNAL OF PROTEOME RESEARCH | 2023年

基金：

美国国家科学基金会; 美国国家卫生研究院; 英国生物技术与生命科学研究理事会;

关键词：

mass spectrometry; proteomics; metabolomics; !text type='Python']Python[!/text; open source; REPOSITORY; METABOLOMICS; PACKAGE;

D O I：

10.1021/acs.jproteome.2c00632

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

spectrum_utils is a Python package for mass spectrometry data processing and visualization. Since its introduction, spectrum_utils has grown into a fundamental software solution that powers various applications in proteomics and metabolomics, ranging from spectrum preprocessing prior to spectrum identification and machine learning applications to spectrum plotting from online data repositories and assisting data analysis tasks for dozens of other projects. Here, we present updates to spectrum_utils, which include new functionality to integrate mass spectrometry community data standards, enhanced mass spectral data processing, and unified mass spectral data visualization in Python.

引用

页码：625 / 631

页数：7

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