Advances in AI for Protein Structure Prediction: Implications for Cancer Drug Discovery and Development

被引:22
作者
Qiu, Xinru [1 ]
Li, Han [2 ]
Ver Steeg, Greg [2 ]
Godzik, Adam [1 ]
机构
[1] Univ Calif Riverside, Sch Med, Div Biomed Sci, Riverside, CA 92521 USA
[2] Univ Calif Riverside, Dept Comp Sci & Engn, Riverside, CA 92521 USA
关键词
AlphaFold2; cancer; drug discovery; artificial intelligence; generative AI;
D O I
10.3390/biom14030339
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Recent advancements in AI-driven technologies, particularly in protein structure prediction, are significantly reshaping the landscape of drug discovery and development. This review focuses on the question of how these technological breakthroughs, exemplified by AlphaFold2, are revolutionizing our understanding of protein structure and function changes underlying cancer and improve our approaches to counter them. By enhancing the precision and speed at which drug targets are identified and drug candidates can be designed and optimized, these technologies are streamlining the entire drug development process. We explore the use of AlphaFold2 in cancer drug development, scrutinizing its efficacy, limitations, and potential challenges. We also compare AlphaFold2 with other algorithms like ESMFold, explaining the diverse methodologies employed in this field and the practical effects of these differences for the application of specific algorithms. Additionally, we discuss the broader applications of these technologies, including the prediction of protein complex structures and the generative AI-driven design of novel proteins.
引用
收藏
页数:16
相关论文
共 66 条
[11]   The Role of AI in Drug Discovery: Challenges, Opportunities, and Strategies [J].
Blanco-Gonzalez, Alexandre ;
Cabezon, Alfonso ;
Seco-Gonzalez, Alejandro ;
Conde-Torres, Daniel ;
Antelo-Riveiro, Paula ;
Pineiro, Angel ;
Garcia-Fandino, Rebeca .
PHARMACEUTICALS, 2023, 16 (06)
[12]   AlphaFold2 protein structure prediction: Implications for drug discovery [J].
Borkakoti, Neera ;
Thornton, Janet M. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2023, 78
[13]   De novo design of new chemical entities for SARS-CoV-2 using artificial intelligence [J].
Bung, Navneet ;
Krishnan, Sowmya R. ;
Bulusu, Gopalakrishnan ;
Roy, Arijit .
FUTURE MEDICINAL CHEMISTRY, 2021, 13 (06) :575-585
[14]  
Burki T, 2020, LANCET DIGIT HEALTH, V2, pE226, DOI 10.1016/S2589-7500(20)30088-1
[15]   How generative AI is building better antibodies [J].
Ewen Callaway .
Nature,
[16]   Synthetic data in machine learning for medicine and healthcare [J].
Chen, Richard J. ;
Lu, Ming Y. ;
Chen, Tiffany Y. ;
Williamson, Drew F. K. ;
Mahmood, Faisal .
NATURE BIOMEDICAL ENGINEERING, 2021, 5 (06) :493-497
[17]   Accurate proteome-wide missense variant effect prediction with AlphaMissense [J].
Cheng, Jun ;
Novati, Guido ;
Pan, Joshua ;
Bycroft, Clare ;
Zemgulyte, Akvile ;
Applebaum, Taylor ;
Pritzel, Alexander ;
Wong, Lai Hong ;
Zielinski, Michal ;
Sargeant, Tobias ;
Schneider, Rosalia G. ;
Senior, Andrew W. ;
Jumper, John ;
Hassabis, Demis ;
Kohli, Pushmeet ;
Avsec, Ziga .
SCIENCE, 2023, 381 (6664) :1303-+
[18]  
Chowdhury R, 2022, NAT BIOTECHNOL, V40, P1617, DOI 10.1038/s41587-022-01432-w
[19]  
Corso G, 2023, Arxiv, DOI [arXiv:2210.01776, 10.48550/arXiv.2210.01776, 10.48550/arxiv.2210.01776, DOI 10.1002/ARXIV:2210.01776]
[20]   scGPT: toward building a foundation model for single-cell multi-omics using generative AI [J].
Cui, Haotian ;
Wang, Chloe ;
Maan, Hassaan ;
Pang, Kuan ;
Luo, Fengning ;
Duan, Nan ;
Wang, Bo .
NATURE METHODS, 2024, 21 (08) :1470-1480