Multiomics reveals glutathione metabolism as a driver of bimodality during stem cell aging

被引:27
作者
Benjamin, Daniel I. [1 ,2 ]
O. Brett, Jamie O. [1 ,2 ,3 ,4 ]
Both, Pieter [1 ,2 ,3 ]
S. Benjamin, Joel [1 ,2 ]
Ishak, Heather L. [2 ]
Kang, Jengmin [1 ,2 ]
Kim, Sooch [1 ,2 ]
Chung, Mingy [1 ,2 ]
Arjona, Marina [1 ,2 ]
Nutter, Christopher W. [2 ]
Tan, Jenna H. [2 ]
Krishnan, Ananya K. [2 ]
Dulay, Hunter [2 ]
Louie, Sharon M. [5 ]
de Morre, Antoine [1 ,2 ,7 ]
Nomura, Daniel K. [5 ]
Rando, Thomas A. [1 ,2 ,6 ,8 ]
机构
[1] Stanford Univ, Dept Neurol & Neurol Sci, Sch Med, Stanford, CA 94305 USA
[2] Stanford Univ, Paul F Glenn Labs Biol Aging, Sch Med, Stanford, CA 94305 USA
[3] Stanford Univ, Stem Cell Biol & Regenerat Med Grad Program, Sch Med, Stanford, CA USA
[4] Stanford Univ, Med Scientist Training Program, Sch Med, Stanford, CA USA
[5] Univ Calif Berkeley, Dept Nutr Sci & Toxicol, Berkeley, CA 94720 USA
[6] Vet Affairs Palo Alto Healthcare Syst, Neurol Serv, Palo Alto, CA 94304 USA
[7] Aarhus Univ, Dept Biomed, DK-8000 Aarhus, Denmark
[8] Univ Calif Los Angeles, Broad Stem Cell Res Ctr, Los Angeles, CA 90095 USA
关键词
NF-KAPPA-B; DNA METHYLATION; SKELETAL-MUSCLE; GENE-EXPRESSION; SATELLITE CELLS; CROSS-TALK; NO LONGER; QUIESCENCE; INHIBITION; CHROMATIN;
D O I
10.1016/j.cmet.2023.02.001
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
With age, skeletal muscle stem cells (MuSCs) activate out of quiescence more slowly and with increased death, leading to defective muscle repair. To explore the molecular underpinnings of these defects, we com-bined multiomics, single-cell measurements, and functional testing of MuSCs from young and old mice. The multiomics approach allowed us to assess which changes are causal, which are compensatory, and which are simply correlative. We identified glutathione (GSH) metabolism as perturbed in old MuSCs, with both causal and compensatory components. Contrary to young MuSCs, old MuSCs exhibit a population dichot-omy composed of GSHhigh cells (comparable with young MuSCs) and GSHlow cells with impaired function-ality. Mechanistically, we show that antagonism between NRF2 and NF-KB maintains this bimodality. Exper-imental manipulation of GSH levels altered the functional dichotomy of aged MuSCs. These findings identify a novel mechanism of stem cell aging and highlight glutathione metabolism as an accessible target for reversing MuSC aging.
引用
收藏
页码:472 / +
页数:22
相关论文
共 101 条
[1]   Motif module map reveals enforcement of aging by continual NF-κB activity [J].
Adler, Adam S. ;
Sinha, Saurabh ;
Kawahara, Tiara L. A. ;
Zhang, Jennifer Y. ;
Segal, Eran ;
Chang, Howard Y. .
GENES & DEVELOPMENT, 2007, 21 (24) :3244-3257
[2]   Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells [J].
Ball, Madeleine P. ;
Li, Jin Billy ;
Gao, Yuan ;
Lee, Je-Hyuk ;
LeProust, Emily M. ;
Park, In-Hyun ;
Xie, Bin ;
Daley, George Q. ;
Church, George M. .
NATURE BIOTECHNOLOGY, 2009, 27 (04) :361-368
[3]   Aging as a Biological Target for Prevention and Therapy [J].
Barzilai, Nir ;
Cuervo, Ana Maria ;
Austad, Steve .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2018, 320 (13) :1321-1322
[4]   H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency [J].
Benayoun, Berenice A. ;
Pollina, Elizabeth A. ;
Ucar, Duygu ;
Mahmoudi, Salah ;
Karra, Kalpana ;
Wong, Edith D. ;
Devarajan, Keerthana ;
Daugherty, Aaron C. ;
Kundaje, Anshul B. ;
Mancini, Elena ;
Hitz, Benjamin C. ;
Gupta, Rakhi ;
Rando, Thomas A. ;
Baker, Julie C. ;
Snyder, Michael P. ;
Cherry, J. Michael ;
Brunet, Anne .
CELL, 2014, 158 (03) :673-688
[5]   p38 MAPK signaling underlies a cell-autonomous loss of stem cell self-renewal in skeletal muscle of aged mice [J].
Bernet, Jennifer D. ;
Doles, Jason D. ;
Hall, John K. ;
Tanaka, Kathleen Kelly ;
Carter, Thomas A. ;
Olwin, Bradley B. .
NATURE MEDICINE, 2014, 20 (03) :265-271
[6]   FBXL10 protects Polycomb-bound genes from hypermethylation [J].
Boulard, Mathieu ;
Edwards, John R. ;
Bestor, Timothy H. .
NATURE GENETICS, 2015, 47 (05) :479-U73
[7]   The ins and outs of muscle stem cell aging [J].
Brack, Andrew S. ;
Munoz-Canoves, Pura .
SKELETAL MUSCLE, 2016, 6
[8]   Feedback loops shape cellular signals in space and time [J].
Brandman, Onn ;
Meyer, Tobias .
SCIENCE, 2008, 322 (5900) :390-395
[9]   Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments [J].
Breitling, R ;
Armengaud, P ;
Amtmann, A ;
Herzyk, P .
FEBS LETTERS, 2004, 573 (1-3) :83-92
[10]   Exercise rejuvenates quiescent skeletal muscle stem cells in old mice through restoration of Cyclin D1 [J].
Brett, Jamie O. ;
Arjona, Marina ;
Ikeda, Mika ;
Quarta, Marco ;
de Morree, Antoine ;
Egner, Ingrid M. ;
Perandini, Luiz A. ;
Ishak, Heather D. ;
Goshayeshi, Armon ;
Benjamin, Daniel I. ;
Both, Pieter ;
Rodriguez-Mateo, Cristina ;
Betley, Michael J. ;
Wyss-Coray, Tony ;
Rando, Thomas A. .
NATURE METABOLISM, 2020, 2 (04) :307-+