The Complete Mitochondrial Genome of Mytilisepta virgata (Mollusca: Bivalvia), Novel Gene Rearrangements, and the Phylogenetic Relationships of Mytilidae

被引:10
作者
Xu, Minhui [1 ]
Gu, Zhongqi [2 ]
Huang, Ji [2 ]
Guo, Baoying [1 ]
Jiang, Lihua [1 ]
Xu, Kaida [3 ]
Ye, Yingying [1 ]
Li, Jiji [1 ]
机构
[1] Zhejiang Ocean Univ, Natl Engn Res Ctr Marine Aquaculture, Zhoushan 316022, Peoples R China
[2] Shengsi Marine Sci & Technol Inst, Zhoushan 202450, Peoples R China
[3] Zhejiang Marine Fisheries Res Inst, Key Lab Sustainable Utilizat Technol Res Fisheries, Sci Observing & Expt Stn Fishery Resources Key Fis, Minist Agr & Rural Affairs China, Zhoushan 316021, Peoples R China
基金
国家重点研发计划; 中国国家自然科学基金;
关键词
Mytilidae; Mytilisepta virgate; mitogenome; gene rearrangement; phylogenetic; TRANSFER-RNA GENES; MOLECULAR PHYLOGENY; DNA SEQUENCE; ROCKY SHORE; EVOLUTION; MUSSEL; ORGANIZATION; FAMILY; MODEL; DUPLICATION;
D O I
10.3390/genes14040910
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The circular mitochondrial genome of Mytilisepta virgata spans 14,713 bp, which contains 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, and 22 transfer RNA genes. Analysis of the 13 PCGs reveals that the mitochondrial gene arrangement of Mytilisepta is relatively conserved at the genus level. The location of the atp8 gene in Mytilisepta keenae differs from that of other species. However, compared with the putative molluscan ancestral gene order, M. virgata exhibits a high level of rearrangement. We constructed phylogenetic trees based on concatenated 12 PCGs from Mytilidae. As a result, we found that M. virgata is in the same clade as other Mytilisepta spp. The result of estimated divergence times revealed that M. virgata and M. keenae diverged around the early Paleogene period, although the oldest Mytilisepta fossil was from the late or upper Eocene period. Our results provide robust statistical evidence for a sister-group relationship within Mytilida. The findings not only confirm previous results, but also provide valuable insights into the evolutionary history of Mytilidae.
引用
收藏
页数:19
相关论文
共 91 条
[31]   Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of Metazoa, and consequences for phylogenetic inferences [J].
Hassanin, A ;
Léger, N ;
Deutsch, J .
SYSTEMATIC BIOLOGY, 2005, 54 (02) :277-298
[32]   Intronic and plasmid-derived regions contribute to the large mitochondrial genome sizes of Agaricomycetes [J].
Himmelstrand, Kajsa ;
Olson, Ake ;
Durling, Mikael Brandstrom ;
Karlsson, Magnus ;
Stenlid, Jan .
CURRENT GENETICS, 2014, 60 (04) :303-313
[33]  
HOFFMANN RJ, 1992, GENETICS, V131, P397
[34]   The complete mitochondrial genome of Platygaster robiniae (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications [J].
Huang, Lan ;
Sun, Hui-Quan ;
Li, Cheng-Jin ;
Zhao, Wen -Xi ;
Yao, Yan-Xia .
INTERNATIONAL JOURNAL FOR PARASITOLOGY-PARASITES AND WILDLIFE, 2022, 18 :249-259
[35]  
Iwasaki Keiji, 1994, Publications of the Seto Marine Biological Laboratory, V36, P223
[36]   Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements [J].
Juehling, Frank ;
Puetz, Joern ;
Bernt, Matthias ;
Donath, Alexander ;
Middendorf, Martin ;
Florentz, Catherine ;
Stadler, Peter F. .
NUCLEIC ACIDS RESEARCH, 2012, 40 (07) :2833-2845
[37]  
Kafanov AI, 1998, MALACOLOGIA, V39, P129
[38]  
Kalyaanamoorthy S, 2017, NAT METHODS, V14, P587, DOI [10.1038/nmeth.4285, 10.1038/NMETH.4285]
[39]   Molecular phylogeny of the Achatinoidea (Mollusca: Gastropoda) [J].
Kendrich Fontanilla, Ian ;
Naggs, Fred ;
Wade, Christopher Mark .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2017, 114 :382-385
[40]   Mitogenomics reveals phylogenetic relationships of Arcoida (Mollusca, Bivalvia) and multiple independent expansions and contractions in mitochondrial genome size [J].
Kong, Lingfeng ;
Li, Yuanning ;
Kocot, Kevin M. ;
Yang, Yi ;
Qi, Lu ;
Li, Qi ;
Halanych, Kenneth M. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 150