In diverse conditions, intrinsic chromatin condensates have liquid-like material properties

被引:24
作者
Gibson, Bryan A. [1 ,2 ,8 ]
Blaukopf, Claudia [3 ]
Lou, Tracy [4 ]
Chen, Lifeng [1 ,2 ]
Doolittle, Lynda K. [1 ,2 ]
Finkelstein, Ilya [5 ,6 ,7 ]
Narlikar, Geeta J. [4 ]
Gerlich, Daniel W. [3 ]
Rosen, Michael K. [1 ,2 ]
机构
[1] Univ Texas Southwestern Med Ctr, Dept Biophys, Dallas, TX 75390 USA
[2] Univ Texas Southwestern Med Ctr, HHMI, Dallas, TX 75390 USA
[3] Austrian Acad Sci, Vienna Bioctr, Inst Mol Biotechnol, A-1030 Vienna, Austria
[4] Univ Calif San Francisco, Dept Biochem & Biophys, San Francisco, CA 94158 USA
[5] Univ Texas Austin, Dept Mol Biosci, Austin, TX 78712 USA
[6] Univ Texas Austin, Inst Cellular & Mol Biol, Austin, TX 78712 USA
[7] Univ Texas Austin, Ctr Syst & Synthet Biol, Austin, TX 78712 USA
[8] St Jude Childrens Res Hosp, Dept Cell & Mol Biol, Memphis, TN 38105 USA
基金
欧洲研究理事会; 奥地利科学基金会;
关键词
chromatin; phase separation; biomolecular condensate; PHASE-SEPARATION; RAPID EXCHANGE; IN-VITRO; DYNAMICS; INTERPHASE; DNA; ORGANIZATION; CELLS; FIBER; GENOME;
D O I
10.1073/pnas.2218085120
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Nuclear DNA in eukaryotes is wrapped around histone proteins to form nucleosomes on a chromatin fiber. Dynamic folding of the chromatin fiber into loops and variations in the degree of chromatin compaction regulate essential processes such as transcription, recombination, and mitotic chromosome segregation. Our understanding of the physical properties that allow chromatin to be dynamically remodeled even in highly compacted states is limited. Previously, we reported that chromatin has an intrinsic capacity to phase separate and form dynamic liquid-like condensates, which can be regulated by cellular factors [B. A. Gibson et al., Cell 179, 470-484.e421 (2019)]. Recent contradictory reports claim that a specific set of solution conditions is required for fluidity in condensates that would otherwise be solid [J. C. Hansen, K. Maeshima, M. J. Hendzel, Epigenetics Chromatin 14, 50 (2021); H. Strickfaden et al., Cell 183, 1772-1784.e1713 (2020)]. We sought to resolve these discrepancies, as our ability to translate with confidence these biophysical observations to cells requires their precise characterization. Moreover, whether chromatin assemblies are dynamic or static affects how processes such as transcription, loop extrusion, and remodeling will engage them inside cells. Here, we show in diverse conditions and without specific buffering components that chromatin fragments form phase separated fluids in vitro. We also explore how sample preparation and imaging affect the experimental observation of chromatin condensate dynamics. Last, we describe how liquid-like in vitro behaviors can translate to the locally dynamic but globally constrained chromatin movement observed in cells.
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页数:10
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