Multi-omics analysis reveals PUS1 triggered malignancy and correlated with immune infiltrates in NSCLC

被引:0
作者
Tan, Yonghuang [1 ]
Wang, Zhaotong [2 ,3 ]
Wang, Yingzhao [1 ]
Tian, Xiaolu [2 ,3 ]
Huang, Yunru [2 ,3 ]
Wu, Guoyong [1 ]
Lu, Jianjun [1 ]
机构
[1] Sun Yat Sen Univ, Affiliated Hosp 1, Dept Thorac Surg, Guangzhou 510080, Guangdong, Peoples R China
[2] Sun Yat Sen Univ, Sch Pharmaceut Sci, Guangdong Key Lab Chiral Mol & Drug Discovery, Guangzhou 510006, Guangdong, Peoples R China
[3] Sun Yat sen Univ, Sch Pharmaceut Sci, Guangdong Prov Key Lab New Drug Design & Evaluat, Guangzhou 510006, Guangdong, Peoples R China
来源
AGING-US | 2023年 / 15卷 / 21期
关键词
lung cancer; PUS1; immune microenvironment; DENDRITIC CELLS; CANCER; CLASSIFICATION; PSEUDOURIDINE;
D O I
暂无
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Non-small cell lung cancer (NSCLC) is the main pathological type of lung cancer. In this study, multi-omics analysis revealed a significant increase of pseudouridine synthase 1 (PUS1) in NSCLC and the high expression of PUS1 was associated with shorter OS (Overall Survival), PFS (Progression Free Survival), and PPS (Post Progression Survival) of NSCLC patients. Clinical subgroup analysis showed that PUS1 may be involved in the occurrence and development of NSCLC. Besides, TIMER, ESTIMATE, and IPS analysis suggested that PUS1 expression was associated with immune cell infiltration, and the expression of PUS1 was significantly negatively correlated with DC cell infiltration. GESA analysis also indicated PUS1 may involve in DNA_REPAIR, E2F_TARGETS, MYC_TARGETS_V2, G2M_CHECKPOINT and MYC_TARGETS_V1 pathways and triggered NSCLC malignancy through MCM5 or XPO1. Furthermore, PUS1 may be a potential target for NSCLC therapy.
引用
收藏
页码:12136 / 12154
页数:19
相关论文
共 39 条
  • [1] MODOMICS: a database of RNA modification pathways. 2021 update
    Boccaletto, Pietro
    Stefaniak, Filip
    Ray, Angana
    Cappannini, Andrea
    Mukherjee, Sunandan
    Purta, Elzbieta
    Kurkowska, Malgorzata
    Shirvanizadeh, Niloofar
    Destefanis, Eliana
    Groza, Paula
    Avsar, Gulben
    Romitelli, Antonia
    Pir, Pinar
    Dassi, Erik
    Conticello, Silvestro G.
    Aguilo, Francesca
    Bujnicki, Janusz M.
    [J]. NUCLEIC ACIDS RESEARCH, 2022, 50 (D1) : D231 - D235
  • [2] UALCAN: An update to the integrated cancer data analysis platform
    Chandrashekar, Darshan Shimoga
    Karthikeyan, Santhosh Kumar
    Korla, Praveen Kumar
    Patel, Henalben
    Shovon, Ahmedur Rahman
    Athar, Mohammad
    Netto, George J.
    Qin, Zhaohui S.
    Kumar, Sidharth
    Manne, Upender
    Creighton, Chad J.
    Varambally, Sooryanarayana
    [J]. NEOPLASIA, 2022, 25 : 18 - 27
  • [3] Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade
    Charoentong, Pornpimol
    Finotello, Francesca
    Angelova, Mihaela
    Mayer, Clemens
    Efremova, Mirjana
    Rieder, Dietmar
    Hackl, Hubert
    Trajanoski, Zlatko
    [J]. CELL REPORTS, 2017, 18 (01): : 248 - 262
  • [4] A Flexible RNA Backbone within the Polypyrimidine Tract Is Required for U2AF65 Binding and Pre-mRNA Splicing In Vivo
    Chen, Chun
    Zhao, Xinliang
    Kierzek, Ryszard
    Yu, Yi-Tao
    [J]. MOLECULAR AND CELLULAR BIOLOGY, 2010, 30 (17) : 4108 - 4119
  • [5] Targeting PUS7 suppresses tRNA pseudouridylation and glioblastoma tumorigenesis
    Cui, Qi
    Yin, Kailin
    Zhang, Xiaoting
    Ye, Peng
    Chen, Xianwei
    Chao, Jianfei
    Meng, Haowei
    Wei, Jiangbo
    Roeth, Daniel
    Li, Li
    Qin, Yue
    Sun, Guihua
    Zhang, Mingzi
    Klein, Jeremy
    Huynhle, Marvin
    Wang, Cheng
    Zhang, Leying
    Badie, Behnam
    Kalkum, Markus
    He, Chuan
    Yi, Chengqi
    Shi, Yanhong
    [J]. NATURE CANCER, 2021, 2 (09) : 932 - +
  • [6] Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution
    Dai, Qing
    Zhang, Li-Sheng
    Sun, Hui-Lung
    Pajdzik, Kinga
    Yang, Lei
    Ye, Chang
    Ju, Cheng-Wei
    Liu, Shun
    Wang, Yuru
    Zheng, Zhong
    Zhang, Linda
    Harada, Bryan T.
    Dou, Xiaoyang
    Irkliyenko, Iryna
    Feng, Xinran
    Zhang, Wen
    Pan, Tao
    He, Chuan
    [J]. NATURE BIOTECHNOLOGY, 2023, 41 (03) : 344 - +
  • [7] Stabilization of RNA stacking by pseudouridine
    Davis, DR
    [J]. NUCLEIC ACIDS RESEARCH, 1995, 23 (24) : 5020 - 5026
  • [8] The nucleolar-related protein Dyskerin pseudouridine synthase 1 (DKC1) predicts poor prognosis in breast cancer
    Elsharawy, Khloud A.
    Mohammed, Omar J.
    Aleskandarany, Mohammed A.
    Hyder, Ayman
    El-Gammal, Hekmat L.
    Abou-Dobara, Mohamed I.
    Green, Andrew R.
    Dalton, Leslie W.
    Rakha, Emad A.
    [J]. BRITISH JOURNAL OF CANCER, 2020, 123 (10) : 1543 - 1552
  • [9] PUS1 is a novel biomarker for predicting poor outcomes and triple-negative status in breast cancer
    Fang, Zheng
    Shen, Hong-yu
    Xu, Qi
    Zhou, Hong-lei
    Li, Lei
    Yang, Si-Yuan
    Zhu, Zhen
    Tang, Jin-hai
    [J]. FRONTIERS IN ONCOLOGY, 2022, 12
  • [10] Unusual base pairing during the decoding of a stop codon by the ribosome
    Fernandez, Israel S.
    Chyan Leong Ng
    Kelley, Ann C.
    Wu, Guowei
    Yu, Yi-Tao
    Ramakrishnan, V.
    [J]. NATURE, 2013, 500 (7460) : 107 - U136