The complete chloroplast genome of Vaccinium oxycoccos (Ericaceae)

被引：1

作者：

Qiao, Xinrong ^{[1
]}

Gu, Qingyi ^{[1
]}

Ye, Run ^{[1
]}

Cai, Jing ^{[1
]}

Zhu, Nailiang ^{[1
]}

机构：

[1] Xinyang Agr & Forestry Univ, Sch Pharmaceut Engn, Xingyang, Henan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2023年 / 8卷 / 09期

关键词：

Vaccinium; chloroplast genome; phylogeny; VITIS-IDAEA L; SEQUENCE DATA;

D O I：

10.1080/23802359.2023.2252943

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Vaccinium species have great significance as fruit crops due to their economic and food values. Here we report the chloroplast genome of V. oxycoccos. The chloroplast genome of V. oxycoccos was 177,088 bp in length with a GC content of 36.74%. LSC, SSC, and IR regions were 104,139 bp, 3031 bp, and 34,959 bp in length, respectively. The chloroplast genome contained 105 different genes, including 73 protein-coding genes, 4 rRNA genes, and 28 tRNA genes. The phylogenetic analysis indicated that V. oxycoccos was closely related to V. microcarpum in the family Ericaceae. This chloroplast genome not only enriches the genome information of Vaccinium, but also will be useful in the evolution study of the family Ericaceae.

引用

页码：942 / 947

页数：6

共 36 条

[1] IRscope: an online program to visualize the junction sites of chloroplast genomes [J].

Amiryousefi, Ali ;

Hyvonen, Jaakko ;

Poczai, Peter .

BIOINFORMATICS, 2018, 34 (17) :3030-3031

[2] The complete chloroplast genome of Rhododendron huadingense (Ericaceae) [J].

An, Ran ;

Niu, Mingyue ;

Lou, Xiongzhen ;

Huang, Huahong ;

Lin, Erpei .

MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (11) :1910-1912

[3] MISA-web: a web server for microsatellite prediction [J].

Beier, Sebastian ;

Thiel, Thomas ;

Muench, Thomas ;

Scholz, Uwe ;

Mascher, Martin .

BIOINFORMATICS, 2017, 33 (16) :2583-2585

[4] The complete chloroplast genome of Vaccinium duclouxii, an endemic species in China [J].

Chen, Xin ;

Liu, Qingzhong ;

Guo, Wei ;

Wei, Hairong ;

Wang, Jiawei ;

Zhu, Dongzi ;

Tan, Yue .

MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02) :2215-2216

[5] The complete plastid genome sequence of Vaccinium japonicum (Ericales: Ericaceae), a deciduous broad-leaved shrub endemic to East Asia [J].

Cho, Won-Bum ;

Han, Eun-Kyeong ;

Choi, In-Su ;

Son, Dong Chan ;

Chung, Gyu Young ;

Lee, Jung-Hyun .

MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (07) :1926-1928

[6] Green giant-a tiny chloroplast genome with mighty power to produce high-value proteins: history and phylogeny [J].

Daniell, Henry ;

Jin, Shuangxia ;

Zhu, Xin-Guang ;

Gitzendanner, Matthew A. ;

Soltis, Douglas E. ;

Soltis, Pamela S. .

PLANT BIOTECHNOLOGY JOURNAL, 2021, 19 (03) :430-447

[7]

Doyle J.J., 1987, BULLETIN, V19, P11

[8] Characterization of in vitro antifungal activities of small and American cranberry (Vaccinium oxycoccos L and V-macrocarpon Aiton) and lingonberry (Vaccinium vitis-idaea L.) concentrates in sugar reduced fruit spreads [J].

Ermis, Ertan ;

Hertel, Christian ;

Schneider, Christin ;

Carle, Reinhold ;

Stintzing, Florian ;

Schmidt, Herbert .

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 2015, 204 :111-117

[9] Chloroplast genome assemblies and comparative analyses of commercially important Vaccinium berry crops [J].

Fahrenkrog, Annette M. ;

Matsumoto, Gabriel O. ;

Toth, Katalin ;

Jokipii-Lukkari, Soile ;

Salo, Heikki M. ;

Haggman, Hely ;

Benevenuto, Juliana ;

Munoz, Patricio R. .

SCIENTIFIC REPORTS, 2022, 12 (01)

[10] Complete plastid genome sequence of Vaccinium macrocarpon: structure, gene content, and rearrangements revealed by next generation sequencing [J].

Fajardo, Diego ;

Senalik, Douglas ;

Ames, Mercedes ;

Zhu, Huayu ;

Steffan, Shawn A. ;

Harbut, Rebecca ;

Polashock, James ;

Vorsa, Nicholi ;

Gillespie, Emily ;

Kron, Kathy ;

Zalapa, Juan E. .

TREE GENETICS & GENOMES, 2013, 9 (02) :489-498

← 1 2 3 4 →