Genome-Wide Association Studies for Albuminuria of non-Diabetic Taiwanese Population

被引:3
作者
Yang, Wei-Shun [1 ,2 ]
Chuang, Gwo-Tsann [2 ,3 ]
Che, Tony Pan-Hou [2 ]
Chueh, Li-Yun [2 ]
Li, Wen-Yi [4 ]
Hsu, Chih-Neng [5 ]
Hsiung, Chia-Ni [6 ]
Ku, Hsiao-Chia [7 ]
Lin, Yi-Ching [7 ]
Chen, Yi-Shun [7 ]
Hee, Siow-Wey [8 ]
Chang, Tien-Jyun [8 ,9 ]
Chen, Shiau-Mei [8 ]
Hsieh, Meng-Lun [10 ]
Lee, Hsiao-Lin [2 ]
Liao, Karen Chia-Wen [11 ]
Shen, Chen-Yang [12 ]
Chang, Yi-Cheng [2 ,8 ,9 ,12 ,13 ]
机构
[1] Natl Taiwan Univ Hosp, Dept Internal Med, Div Nephrol, Hsinchu Branch, Hsinchu, Taiwan
[2] Natl Taiwan Univ, Grad Inst Med Genom & Proteom, Taipei, Taiwan
[3] Natl Taiwan Univ, Childrens Hosp, Dept Pediat, Div Nephrol, Taipei, Taiwan
[4] Natl Taiwan Univ Hosp, Dept Internal Med, Div Nephrol, Yunlin Branch, Yunlin, Taiwan
[5] Natl Taiwan Univ Hosp, Cardiovasc Ctr, Yunlin Branch, Yunlin, Taiwan
[6] Acad Sinica, Inst Stat Sci, Data Sci Stat Cooperat Ctr, Taipei, Taiwan
[7] Natl Taiwan Univ Hosp, Dept Lab Med, Hsinchu Branch, Hsinchu, Taiwan
[8] Natl Taiwan Univ Hosp, Dept Internal Med, Taipei, Taiwan
[9] Natl Taiwan Univ Hosp, Coll Med, Dept Med, Taipei, Taiwan
[10] Univ Florida, Coll Pharm, Dept Med Chem, Gainesville, FL USA
[11] Univ Chicago, Biol Sci Div, Chicago, IL USA
[12] Acad Sinica, Inst Biomed Sci, Taipei, Taiwan
[13] 5F,2,Xuzhou Rd, Taipei 100, Taiwan
关键词
GLOMERULAR-FILTRATION-RATE; CARDIOVASCULAR MORTALITY; GENOTYPE IMPUTATION; RENAL-FUNCTION; GENETIC-LOCI; TCF7L2; GENE; ALL-CAUSE; DISEASE; VARIANTS; COMMON;
D O I
10.1159/000531783
中图分类号
R5 [内科学]; R69 [泌尿科学(泌尿生殖系疾病)];
学科分类号
1002 ; 100201 ;
摘要
Background Chronic renal disease (CKD), defined by reduced estimated glomerular filtration rate (eGFR) and albuminuria, imposes huge health burden worldwide. Ethnicity-specific associations were frequently observed in genome-wide association studies (GWAS). In this research, we conducted GWAS of albuminuria in the non-diabetic population of Taiwan.Subjects and Methods Non-diabetic individuals aged 30 to 70 years and without cancer history were enrolled from the Taiwan Biobank. A total of 6,768 subjects received spot urine examination. After quality control with PLINK and imputation with SHAPEIT and IMPUTE2, a total of 3,638,350 single nucleotide polymorphisms (SNPs) remained for testing. SNPs with minor allele frequency low than 0.1% were excluded. We applied linear regression for analyzing associations between SNPs and log UACR.Results We identified six loci in or near the FCRL3 (P = 2.56 x 10-6), TMEM161(P = 4.43 x 10-6), EFCAB1 (P = 2.03 x 10-6), ELMOD1 (P = 2.97 x 10-6), RYR3 (P = 1.34 x 10-6), and PIEZO2 (P = 2.19 x 10-7) as candidate. Genetic variants in the FCRL3 gene that encodes a secretory IgA receptor were found to be associated with IgA nephropathy, which might manifest proteinuria. The PIEZO2 gene encodes a sensor for mechanical forces in mesangial cells and renin-producing cells.Conclusion We identified five new loci and one known suggestive loci for albuminuria in the non-diabetic Taiwanese population.
引用
收藏
页码:359 / 369
页数:11
相关论文
共 63 条
  • [1] Human Fc Receptor-like 3 Inhibits Regulatory T Cell Function and Binds Secretory IgA
    Agarwal, Stuti
    Kraus, Zachary
    Dement-Brown, Jessica
    Alabi, Oyeleye
    Starost, Kyle
    Tolnay, Mate
    [J]. CELL REPORTS, 2020, 30 (05): : 1292 - +
  • [2] Albuminuria and Estimated Glomerular Filtration Rate as Predictors of Diabetic End-Stage Renal Disease and Death
    Berhane, Abeba M.
    Weil, E. Jennifer
    Knowler, William C.
    Nelson, Robert G.
    Hanson, Robert L.
    [J]. CLINICAL JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY, 2011, 6 (10): : 2444 - 2451
  • [3] CUBN Is a Gene Locus for Albuminuria
    Boeger, Carsten A.
    Chen, Ming-Huei
    Tin, Adrienne
    Olden, Matthias
    Koettgen, Anna
    de Boer, Ian H.
    Fuchsberger, Christian
    O'Seaghdha, Conall M.
    Pattaro, Cristian
    Teumer, Alexander
    Liu, Ching-Ti
    Glazer, Nicole L.
    Li, Man
    O'Conne, Jeffrey R.
    Tanaka, Toshiko
    Peralta, Carmen A.
    Kutalik, Zoltan
    Luan, Jian'an
    Zhao, Jing Hua
    Hwang, Shih-Jen
    Akylbekova, Ermeg
    Kramer, Holly
    van der Harst, Pim
    Smith, Albert V.
    Lohman, Kurt
    de Andrade, Mariza
    Hayward, Caroline
    Kollerits, Barbara
    Toenjes, Anke
    Aspelund, Thor
    Ingelsson, Erik
    Eiriksdottir, Gudny
    Launer, Lenore J.
    Harris, Tamara B.
    Shuldiner, Alan R.
    Mitchell, Braxton D.
    Arking, Dan E.
    Franceschini, Nora
    Boerwinkle, Eric
    Egan, Josephine
    Hernandez, Dena
    Reilly, Muredach
    Townsend, Raymond R.
    Lumley, Thomas
    Siscovick, David S.
    Psaty, Bruce M.
    Kestenbaum, Bryan
    Haritunians, Talin
    Bergmann, Sven
    Vollenweider, Peter
    [J]. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY, 2011, 22 (03): : 555 - 570
  • [4] Association study of the genetic Polymorphisms of the transcription factor 7-like 2 (TCF7L2) gene and type 2 diabetes in the chinese population
    Chang, Yi-Cheng
    Chang, Tien-Jyun
    Jiang, Yi-Der
    Kuo, Shan-Shan
    Lee, Kuan-Ching
    Chin, Ken C.
    Chuang, Lee-Ming
    [J]. DIABETES, 2007, 56 (10) : 2631 - 2637
  • [5] Population structure of Han Chinese in the modern Taiwanese population based on 10,000 participants in the Taiwan Biobank project
    Chen, Chien-Hsiun
    Yang, Jenn-Hwai
    Chiang, Charleston W. K.
    Hsiung, Chia-Ni
    Wu, Pei-Ei
    Chang, Li-Ching
    Chu, Hou-Wei
    Chang, Josh
    Song, I-Wen
    Yang, Show-Ling
    Chen, Yuan-Tsong
    Liu, Fu-Tong
    Shen, Chen-Yang
    [J]. HUMAN MOLECULAR GENETICS, 2016, 25 (24) : 5321 - 5331
  • [6] Chronic Kidney Disease Diagnosis and Management: A Review
    Chen, Teresa K.
    Knicely, Daphne H.
    Grams, Morgan E.
    [J]. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2019, 322 (13): : 1294 - 1304
  • [7] The variant call format and VCFtools
    Danecek, Petr
    Auton, Adam
    Abecasis, Goncalo
    Albers, Cornelis A.
    Banks, Eric
    DePristo, Mark A.
    Handsaker, Robert E.
    Lunter, Gerton
    Marth, Gabor T.
    Sherry, Stephen T.
    McVean, Gilean
    Durbin, Richard
    [J]. BIOINFORMATICS, 2011, 27 (15) : 2156 - 2158
  • [8] Functional roles for PIEZO1 and PIEZO2 in urothelial mechanotransduction and lower urinary tract interoception
    Dalghi, Marianela G.
    Ruiz, Wily G.
    Clayton, Dennis R.
    Montalbetti, Nicolas
    Daugherty, Stephanie L.
    Beckel, Jonathan M.
    Carattino, Marcelo D.
    Apodaca, Gerard
    [J]. JCI INSIGHT, 2021, 6 (19)
  • [9] Improved whole-chromosome phasing for disease and population genetic studies
    Delaneau, Olivier
    Zagury, Jean-Francois
    Marchini, Jonathan
    [J]. NATURE METHODS, 2013, 10 (01) : 5 - 6
  • [10] Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies
    Duggal, Priya
    Gillanders, Elizabeth M.
    Holmes, Taura N.
    Bailey-Wilson, Joan E.
    [J]. BMC GENOMICS, 2008, 9 (1)