Computational de novo protein design: From secondary to primary, then toward tertiary structures

被引:4
|
作者
Quan, Lijun [1 ,2 ,3 ]
Wu, Tingfang [1 ,2 ,3 ]
Lyu, Qiang [1 ,2 ,3 ]
机构
[1] Soochow Univ, Sch Comp Sci & Technol, Suzhou 215006, Peoples R China
[2] Soochow Univ, Prov Key Lab Informat Proc Technol, Suzhou 215006, Peoples R China
[3] Collaborat Innovat Ctr Novel Software Technol & In, Nanjing 210000, Peoples R China
来源
CHEM | 2023年 / 9卷 / 07期
关键词
D O I
10.1016/j.chempr.2023.06.010
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Proteins are the building blocks of life, and the secondary structures of proteins are the keystones for protein functioning. In this issue of Chem, Buehler and co-workers develop deep learning models to generate de novo proteins with specified secondary structure constraints, similar to automatically constructing a functional house with given desired keystones.
引用
收藏
页码:1625 / 1627
页数:3
相关论文
共 50 条
  • [11] A Brief History of De Novo Protein Design: Minimal, Rational, and Computational
    Woolfson, Derek N.
    JOURNAL OF MOLECULAR BIOLOGY, 2021, 433 (20)
  • [12] De novo enzymes: from computational design to mRNA display
    Golynskiy, Misha V.
    Seelig, Burckhard
    TRENDS IN BIOTECHNOLOGY, 2010, 28 (07) : 340 - 345
  • [13] De novo protein design
    O'Driscoll, Cath
    CHEMISTRY & INDUSTRY, 2020, 84 (03) : 8 - 8
  • [14] De novo protein design
    Degrado, William
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 257
  • [15] De novo protein design
    Degrado, William
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2018, 255
  • [16] De novo protein design
    Koehl, P
    Levitt, M
    DYNAMICS, STRUCTURE AND FUNCTION OF BIOLOGICAL MACROMOLECULES, 2001, 315 : 57 - 75
  • [17] Protein de novo design
    Tuchscherer, G
    Dumy, P
    Mutter, M
    CHIMIA, 1996, 50 (12) : 644 - 648
  • [18] Role of backbone strain in de novo design of complex α/β protein structures
    Koga, Nobuyasu
    Koga, Rie
    Liu, Gaohua
    Castellanos, Javier
    Montelione, Gaetano T.
    Baker, David
    NATURE COMMUNICATIONS, 2021, 12 (01)
  • [19] Role of backbone strain in de novo design of complex α/β protein structures
    Nobuyasu Koga
    Rie Koga
    Gaohua Liu
    Javier Castellanos
    Gaetano T. Montelione
    David Baker
    Nature Communications, 12
  • [20] Expanding the space of protein geometries by computational design of de novo fold families
    Pan, Xingjie
    Thompson, Michael C.
    Zhang, Yang
    Liu, Lin
    Fraser, James S.
    Kelly, Mark J. S.
    Kortemme, Tanja
    SCIENCE, 2020, 369 (6507) : 1132 - +