Draft genome sequencing data of a feather mite, Amerodectes protonotaria Hernandes 2018 (Acariformes: Proctophyllodidae)

被引:2
作者
Matthews, Alix E. [1 ,2 ,3 ]
Boves, Than J. [3 ]
Percy, Katie L. [4 ,5 ]
Wijeratne, Asela J. [3 ]
机构
[1] Arkansas State Univ, Coll Sci & Math, Jonesboro, AR 72401 USA
[2] Arkansas State Univ, Mol Biosci Program, Jonesboro, AR 72401 USA
[3] Arkansas State Univ, Dept Biol Sci, Jonesboro, AR 72401 USA
[4] Natl Audubon Soc, Audubon Delta, Baton Rouge, LA USA
[5] US Dept Agr, Nat Resources Conservat Serv, Addis, LA USA
基金
美国国家科学基金会;
关键词
Acari; Analgoidea; Coevolution; Illumina; Symbioses; Whole genome sequencing;
D O I
10.1016/j.dib.2022.108835
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Feather mites are ubiquitous, permanent, obligate ectosymbionts of avian hosts and are a valuable natural system for studying host-symbiont evolutionary and ecological dynamics at multiple levels of biological organization. However, a lack of a sequenced genome impedes molecular studies using this system. Therefore, we present the first draft genome of a symbiotic feather mite, Amerodectes protonotaria Hernandes 2018. The genome sequence data presented here were derived from an individual female mite that was collected in the field from Protonotaria citrea, its only known host species. Short read sequence data were obtained using an Illumina NovaSeq 60 0 0 platform. From these data, we assembled a 59,665,063 bp draft genome consisting of 2,399 contigs. Raw short reads and the assembled genome sequence are available at the National Center for Biotechnology Information (NCBI)'s Sequence Read Archive (SRA) under BioProject PRJNA884722. The data presented here are beneficial for future research on the biology and evolution of closely related mites and the genomics of host-symbiont interactions.
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页数:7
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共 19 条
[1]   aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data [J].
Allen, Julie M. ;
LaFrance, Raphael ;
Folk, Ryan A. ;
Johnson, Kevin P. ;
Guralnick, Robert P. .
EVOLUTIONARY BIOINFORMATICS, 2018, 14
[2]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[3]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[4]   Chromosome-level assembly of Dermatophagoides farinae genome and transcriptome reveals two novel allergens Derf 37 and Derf 39 [J].
Chen, Jiajie ;
Cai, Zelang ;
Fan, Dingding ;
Hu, Jiayu ;
Hou, Yibo ;
He, Yongsen ;
Zhang, Zhen ;
Zhao, Zhenfu ;
Gao, Pan ;
Hu, Wanzhen ;
Sun, Jinlyu ;
Li, Jiang ;
Ji, Kunmei .
WORLD ALLERGY ORGANIZATION JOURNAL, 2021, 14 (10)
[5]   The complete mitochondrial genome of the house dust mite Dermatophagoides pteronyssinus (Trouessart): a novel gene arrangement among arthropods [J].
Dermauw, Wannes ;
Van Leeuwen, Thomas ;
Vanholme, Bartel ;
Tirry, Luc .
BMC GENOMICS, 2009, 10
[6]   Cophylogenetic analyses reveal extensive host-shift speciation in a highly specialized and host-specific symbiont system [J].
Dona, Jorge ;
Sweet, Andrew D. ;
Johnson, Kevin P. ;
Serrano, David ;
Mironov, Sergey ;
Jovani, Roger .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2017, 115 :190-196
[7]   The complete mitochondrial genome of the feather mite Trouessartia rubecula Jablonska, 1968 (Astigmata: Analgoidea: Trouessartiidae) [J].
Esteban, Rocio ;
Dona, Jorge ;
Vierna, Joaquin ;
Vizcaino, Anton ;
Serrano, David ;
Jovani, Roger .
MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02) :652-654
[8]   Small genomes in most mites (but not ticks) [J].
Gregory, T. Ryan ;
Young, Monica R. .
INTERNATIONAL JOURNAL OF ACAROLOGY, 2020, 46 (01) :1-8
[9]   QUAST: quality assessment tool for genome assemblies [J].
Gurevich, Alexey ;
Saveliev, Vladislav ;
Vyahhi, Nikolay ;
Tesler, Glenn .
BIOINFORMATICS, 2013, 29 (08) :1072-1075
[10]   Is Permanent Parasitism Reversible?-Critical Evidence from Early Evolution of House Dust Mites [J].
Klimov, Pavel B. ;
OConnor, Barry .
SYSTEMATIC BIOLOGY, 2013, 62 (03) :411-423