Identification of interaction of 1,2,3,6-Tetrahydro-2,6-dioxo-4-pyrimidine-carboxylic acid using DFT studies, molecular docking, biological activity and topology analysis for biological applications

被引:6
作者
Amalanathan, M. [1 ,5 ]
Brintha, T. [2 ,5 ]
Sijana, S. [1 ,5 ]
Babu, P. J. Jegan [3 ,5 ]
Mary, M. Sony Michael [4 ]
机构
[1] Nanjil Catholic Coll Arts & Sci, Dept Phys & Res Ctr, Kaliyakkavilai 629153, Tamil Nadu, India
[2] Nesamony Mem Christian Coll Marthandam, Reg 1921311213201, Kanyakumari, Tamil Nadu, India
[3] Nesamony Mem Christian Coll Marthandam, Dept Phys & Res Ctr, Kanyakumari, Tamil Nadu, India
[4] Annai Velankanni Coll Engn, Dept Phys, Kanyakumari 629401, Tamil Nadu, India
[5] Manonmaniam Sundaranar Univ, Tirunelveli 627012, Tamil Nadu, India
来源
CHEMICAL PHYSICS IMPACT | 2023年 / 7卷
关键词
DFT; ELF; LOL; RDG; NBO analysis; HOMO-LUMO; Docking; NONLINEAR-OPTICAL PROPERTIES; DENSITY-FUNCTIONAL THEORY; AB-INITIO HF; OROTIC-ACID; VIBRATIONAL-SPECTRA; CRYSTAL-STRUCTURE; OROTATE COMPLEXES; HARTREE-FOCK; BOND-LENGTH; NBO;
D O I
10.1016/j.chphi.2023.100393
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
1,2,3,6-Tetrahydro-2,6-dioxo-4-pyrimidinecarboxylic acid and its salts are present in the cells and bodily fluids of many living things, and they play a significant role in biological systems as precursors to pyrimidine nucleosides. The work aims to determine the structural and biological properties of TDPCA by theoretical and experimental spectroscopic investigations. B3LYP/6-311++G(d,p) level computations were used for all theoretical calculations. Functional groups, vibrational modes, and the aromatic nature of TDPCA have all been predicted for the molecule using FT-IR and FT-Raman spectroscopy techniques. The NBO analysis was conducted to comprehend the likely charge transfer interaction that exists in the molecule. The delocalization can be determined by the analysis of HOMO and LUMO. Low energy gap between HOMO and LUMO is shown to be predictive of electron transport and results in bioactivity in the molecule. Analysis of the molecule's topology was done to determine its reactivity. Using molecular docking, the anticancer efficacy of the drug against IA PI 3kinase inhibitor receptors for protein targets (2WXQ) was investigated.
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页数:9
相关论文
共 87 条
[1]  
Akalin A.S., 1996, Milchwissenschaft
[2]   BOND LENGTH AND REACTIVITY - VARIABLE LENGTH OF THE C-O SINGLE BOND [J].
ALLEN, FH ;
KIRBY, AJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1984, 106 (21) :6197-6200
[3]  
[Anonymous], 2003, World cancer report
[4]  
[Anonymous], 1969, Vibrational spectra of benzene derivatives
[5]   Integrated Spectroscopic, Bio-active Prediction and Analytics of Isoquinoline Derivative for Breast Cancer Mitigation [J].
Apebende, Chioma G. ;
Idante, Precious S. ;
Louis, Hitler ;
Ameuru, Umar S. ;
Unimuke, Tomsmith O. ;
Gber, Terkumbur E. ;
Agwamba, Ernest A. ;
Benjamin, Innocent ;
Asogwa, Fredrick C. .
CHEMISTRY AFRICA-A JOURNAL OF THE TUNISIAN CHEMICAL SOCIETY, 2022, 5 (06) :1979-1995
[6]   COORDINATION SITES OF 5-NITRO-6-CARBOXYURACIL - UV STUDY AND X-RAY STRUCTURE DETERMINATION OF DIAMMINE(5-NITROOROTATO)COPPER(II) HYDRATE AND HEXAAMMINEBIS(5-NITROOROTATO)TRICOPPER(II) PENTAHYDRATE [J].
ARRIZABALAGA, P ;
CASTAN, P ;
DAHAN, F .
INORGANIC CHEMISTRY, 1983, 22 (16) :2245-2252
[7]   Structural benchmarking, density functional theory simulation, spectroscopic investigation and molecular docking of N-(1H-pyrrol-2-yl) methylene)-4-methylaniline as castration-resistant prostate cancer chemotherapeutic agent [J].
Asogwa, Fredrick C. ;
Agwamba, Ernest C. ;
Louis, Hitler ;
Muozie, Maryjane C. ;
Benjamin, Innocent ;
Gber, Terkumbur E. ;
Mathias, Gideon E. ;
Adeyinka, Adedapo S. ;
Ikeuba, Alexander I. .
CHEMICAL PHYSICS IMPACT, 2022, 5
[8]   OROTATE COMPLEXES - SYNTHESIS AND CRYSTAL-STRUCTURE OF LITHIUM OROTATE(-I) MONOHYDRATE AND MAGNESIUM BIS[OROTATE(-I)] OCTAHYDRATE [J].
BACH, I ;
KUMBERGER, O ;
SCHMIDBAUR, H .
CHEMISCHE BERICHTE, 1990, 123 (12) :2267-2271
[9]  
Bader R. F. W., 1990, ATOMS MOL QUANTUM TH
[10]  
Ballamy L.J., 1980, The Infrared Spectra of Complex Molecules, V2