Computational Modeling and Evaluation of Potential mRNA and Peptide-Based Vaccine against Marburg Virus (MARV) to Provide Immune Protection against Hemorrhagic Fever

被引:16
作者
Albaqami, Faisal F. [1 ]
Altharawi, Ali [2 ]
Althurwi, Hassan N. [1 ]
Alharthy, Khalid M. [1 ]
Qasim, Muhammad [3 ]
Muhseen, Ziyad Tariq [4 ]
ul Qamar, Muhammad Tahir [3 ]
机构
[1] Prince Sattam Bin Abdulaziz Univ, Coll Pharm, Dept Pharmacol, Al Kharj 11942, Saudi Arabia
[2] Prince Sattam Bin Abdulaziz Univ, Coll Pharm, Dept Pharmaceut Chem, Al Kharj 11942, Saudi Arabia
[3] Govt Coll Univ Faisalabad GCUF, Dept Bioinformat & Biotechnol, Faisalabad 38000, Pakistan
[4] Al Mustaqbal Univ Coll, Dept Pharm, Hillah 51001, Babylon, Iraq
关键词
D O I
10.1155/2023/5560605
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
A hemorrhagic fever caused by the Marburg virus (MARV) belongs to the Filoviridae family and has been classified as a risk group 4 pathogen. To this day, there are no approved effective vaccinations or medications available to prevent or treat MARV infections. Reverse vaccinology-based approach was formulated to prioritize B and T cell epitopes utilizing a numerous immunoinformatics tools. Potential epitopes were systematically screened based on various parameters needed for an ideal vaccine such as allergenicity, solubility, and toxicity. The most suitable epitopes capable of inducing immune response were shortlisted. Epitopes with population coverage of 100% and fulfilling set parameters were selected for docking with human leukocyte antigen molecules, and binding affinity of each peptide was analyzed. Finally, 4 CTL and HTL each while 6 B cell 16-mers were used for designing multiepitope subunit (MSV) and mRNA vaccine joined via suitable linkers. Immune simulations were used to validate the constructed vaccine's capacity to induce a robust immune response whereas molecular dynamics simulations were used to confirm epitope-HLA complex stability. Based on these parameter's studies, both the vaccines constructed in this study offer a promising choice against MARV but require further experimental verification. This study provides a rationale point to begin with the development of an efficient vaccine against Marburg virus; however, the findings need further experimental validation to confirm the computational finding of this study.
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页数:18
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共 80 条
[1]   Designing a novel mRNA vaccine against SARS-CoV-2: An immunoinformatics approach [J].
Ahammad, Ishtiaque ;
Lira, Samia Sultana .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2020, 162 :820-837
[2]   Gapped sequence alignment using artificial neural networks: application to the MHC class I system [J].
Andreatta, Massimo ;
Nielsen, Morten .
BIOINFORMATICS, 2016, 32 (04) :511-517
[3]   Human CD4+ T Cell Responses to an Attenuated Tetravalent Dengue Vaccine Parallel Those Induced by Natural Infection in Magnitude, HLA Restriction, and Antigen Specificity [J].
Angelo, Michael A. ;
Grifoni, Alba ;
O'Rourke, Patrick H. ;
Sidney, John ;
Paul, Sinu ;
Peters, Bjoern ;
de Silva, Aruna D. ;
Phillips, Elizabeth ;
Mallal, Simon ;
Diehl, Sean A. ;
Kirkpatrick, Beth D. ;
Whitehead, Stephen S. ;
Durbin, Anna P. ;
Sette, Alessandro ;
Weiskopf, Daniela .
JOURNAL OF VIROLOGY, 2017, 91 (05)
[4]  
[Anonymous], 2005, Virus taxonomy: VIIIth report of the international committee on taxonomy of viruses
[5]   VP24 of Marburg virus influences formation of infectious particles [J].
Bamberg, S ;
Kolesnikova, L ;
Möller, P ;
Klenk, HD ;
Becker, S .
JOURNAL OF VIROLOGY, 2005, 79 (21) :13421-13433
[6]   UniProt: a worldwide hub of protein knowledge [J].
Bateman, Alex ;
Martin, Maria-Jesus ;
Orchard, Sandra ;
Magrane, Michele ;
Alpi, Emanuele ;
Bely, Benoit ;
Bingley, Mark ;
Britto, Ramona ;
Bursteinas, Borisas ;
Busiello, Gianluca ;
Bye-A-Jee, Hema ;
Da Silva, Alan ;
De Giorgi, Maurizio ;
Dogan, Tunca ;
Castro, Leyla Garcia ;
Garmiri, Penelope ;
Georghiou, George ;
Gonzales, Daniel ;
Gonzales, Leonardo ;
Hatton-Ellis, Emma ;
Ignatchenko, Alexandr ;
Ishtiaq, Rizwan ;
Jokinen, Petteri ;
Joshi, Vishal ;
Jyothi, Dushyanth ;
Lopez, Rodrigo ;
Luo, Jie ;
Lussi, Yvonne ;
MacDougall, Alistair ;
Madeira, Fabio ;
Mahmoudy, Mahdi ;
Menchi, Manuela ;
Nightingale, Andrew ;
Onwubiko, Joseph ;
Palka, Barbara ;
Pichler, Klemens ;
Pundir, Sangya ;
Qi, Guoying ;
Raj, Shriya ;
Renaux, Alexandre ;
Lopez, Milagros Rodriguez ;
Saidi, Rabie ;
Sawford, Tony ;
Shypitsyna, Aleksandra ;
Speretta, Elena ;
Turner, Edward ;
Tyagi, Nidhi ;
Vasudev, Preethi ;
Volynkin, Vladimir ;
Wardell, Tony .
NUCLEIC ACIDS RESEARCH, 2019, 47 (D1) :D506-D515
[7]   Treatment of Marburg and Ebola hemorrhagic fevers: A strategy for testing new drugs and vaccines under outbreak conditions [J].
Bausch, Daniel G. ;
Sprecher, A. G. ;
Jeffs, Benjamin ;
Boumandouki, Paul .
ANTIVIRAL RESEARCH, 2008, 78 (01) :150-161
[8]   POLY(A), POLY(A) BINDING-PROTEIN AND THE REGULATION OF MESSENGER-RNA STABILITY [J].
BERNSTEIN, P ;
ROSS, J .
TRENDS IN BIOCHEMICAL SCIENCES, 1989, 14 (09) :373-377
[9]   Properties of MHC Class I Presented Peptides That Enhance Immunogenicity [J].
Calis, Jorg J. A. ;
Maybeno, Matt ;
Greenbaum, Jason A. ;
Weiskopf, Daniela ;
De Silva, Aruna D. ;
Sette, Alessandro ;
Kesmir, Can ;
Peters, Bjoern .
PLOS COMPUTATIONAL BIOLOGY, 2013, 9 (10)
[10]   How the Interval between Prime and Boost Injection Affects the Immune Response in a Computational Model of the Immune System [J].
Castiglione, F. ;
Mantile, F. ;
De Berardinis, P. ;
Prisco, A. .
COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE, 2012, 2012