High-throughput virtual screening of small-molecule inhibitors targeting immune cell checkpoints to discover new immunotherapeutics for human diseases

被引:16
作者
Singh, Satyendra [1 ]
Kumar, Ketan [1 ]
Panda, Mamta [1 ]
Srivastava, Aryan [2 ]
Mishra, Amit [3 ]
Prajapati, Vijay Kumar [1 ]
机构
[1] Cent Univ Rajasthan, Sch Life Sci, Dept Biochem, NH-8, Ajmer 305817, Rajasthan, India
[2] Spring Ford Area High Sch, Royersford, PA 19468 USA
[3] Indian Inst Technol Jodhpur, Cellular & Mol Neurobiol Unit, Jodhpur 342011, Rajasthan, India
关键词
Immune checkpoint inhibitors; Natural compound inhibitors; FDA-approved; FDA phase-I passed compounds; PROTEIN; RECEPTOR; CTLA-4; CD28; CD80; PD-1; LYMPHOCYTE; MECHANISMS; IPILIMUMAB; EXPRESSION;
D O I
10.1007/s11030-022-10452-2
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Immunotherapy is widely used to treat various cancers, and the drugs used are called immune checkpoint (ICP) inhibitors. Overexpression of immune cell checkpoints is reported for other human diseases such as acute infections (malaria), chronic viral infection (HIV, hepatitis B virus, TB infections), allergy, asthma, neurodegeneration, and autoimmune diseases. Some mAbs (monoclonal antibodies) are available against ICPs, but they have side effects. Small molecule seems to be safer in comparison with mAbs. Three independent small-molecule inhibitor libraries consisting of 9466 compounds were screened against seven immune cell checkpoints by applying high-throughput virtual screening approach. A total of 13 ICP inhibitors were finalized based on docking, MM-GBSA scores, and ADME properties. Six compounds were selected for MD simulation, and then, rutin hydrate (targeting all seven immune cell checkpoints), amikacin hydrate (targeting six), and 6-hydroxyluteolin (targeting three) were found to be the best immune cell checkpoint inhibitors. These three potential inhibitors have shown the potential to activate human immune cells and thus may control the spread of human lifestyle or infectious diseases. Proposed inhibitors warrant the in vitro and in vivo validation to develop it as an immunotherapeutic. [GRAPHICS] .
引用
收藏
页码:729 / 751
页数:23
相关论文
共 66 条
  • [1] Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
    Abraham, Mark James
    Murtola, Teemu
    Schulz, Roland
    Páll, Szilárd
    Smith, Jeremy C.
    Hess, Berk
    Lindah, Erik
    [J]. SoftwareX, 2015, 1-2 : 19 - 25
  • [2] Molecular Modeling Studies on the Binding Mode of the PD-1/PD-L1 Complex Inhibitors
    Almahmoud, Suliman
    Zhong, Haizhen A.
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 20 (18)
  • [3] [Anonymous], 2019, MONOCLONAL ANTIBODIE
  • [4] The PD1:PD-L1/2 Pathway from Discovery to Clinical implementation
    Bardhan, Kankana
    Anagnostou, Theodora
    Boussiotis, Vassiliki A.
    [J]. FRONTIERS IN IMMUNOLOGY, 2016, 7
  • [5] The Protein Data Bank
    Berman, HM
    Westbrook, J
    Feng, Z
    Gilliland, G
    Bhat, TN
    Weissig, H
    Shindyalov, IN
    Bourne, PE
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 235 - 242
  • [6] Berry ED, 2010, ADV FOOD NUTR RES, V60, P67, DOI 10.1016/S1043-4526(10)60004-6
  • [7] Structure/function of human killer cell immunoglobulin-like receptors: lessons from polymorphisms, evolution, crystal structures and mutations
    Campbell, Kerry S.
    Purdy, Amanda K.
    [J]. IMMUNOLOGY, 2011, 132 (03) : 315 - 325
  • [8] TIGIT Marks Exhausted T Cells, Correlates with Disease Progression, and Serves as a Target for Immune Restoration in HIV and SIV Infection
    Chew, Glen M.
    Fujita, Tsuyoshi
    Webb, Gabriela M.
    Burwitz, Benjamin J.
    Wu, Helen L.
    Reed, Jason S.
    Hammond, Katherine B.
    Clayton, Kiera L.
    Ishii, Naoto
    Abdel-Mohsen, Mohamed
    Liegler, Teri
    Mitchell, Brooks I.
    Hecht, Frederick M.
    Ostrowski, Mario
    Shikuma, Cecilia M.
    Hansen, Scott G.
    Maurer, Mark
    Korman, Alan J.
    Deeks, Steven G.
    Sacha, Jonah B.
    Ndhlovu, Lishomwa C.
    [J]. PLOS PATHOGENS, 2016, 12 (01)
  • [9] Clinical Trials.gov,, INULIN INFECT INTENS
  • [10] Attenuating lymphocyte activity - The crystal structure of the BTLA-HVEM complex
    Compaan, DM
    Gonzalez, LC
    Tom, I
    Loyet, KM
    Eaton, D
    Hymowitz, SG
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (47) : 39553 - 39561