Making the most effective use of available computational methods for drug repositioning

被引:2
作者
Gori, Denis Prada N. [1 ,2 ]
Alberca, Lucas N. [1 ,2 ]
Talevi, Alan [1 ,2 ]
机构
[1] Univ La Plata UNLP, Fac Exact Sci, Lab Bioact Cpd Res & Dev LIDeB, La Plata, Argentina
[2] Argentinean Natl Council Sci & Tech Res, CONICET, CCT La Plata, La Plata, Argentina
关键词
Drug repurposing; drug repositioning; computer-aided drug repurposing; in silico drug repurposing; portfolio management; network analysis; electronic health records; chemoproteomics; CONNECTIVITY MAP; SMALL MOLECULES; STRATEGIES; INHIBITORS; ACCURACY; CANDO;
D O I
10.1080/17460441.2023.2198700
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
IntroductionOver the last decades, there has been substantial debate around the apparent drop in productivity in the pharmaceutical sector. The development of second or further medical uses for known drugs is a possible answer to expedite the development of new therapeutic solutions. Computational methods are among the main strategies for exploring drug repurposing opportunities in a systematic manner.Areas coveredThis article reviews three general approximations to systematically discover new therapeutic uses for existing drugs: disease-, target-, and drug-centric approaches, along with some recently reported computational methods associated with them.Expert opinionComputational methods are essential for organizing and analyzing the large volume of available biomedical data, which has grown exponentially in the era of big data. The clearest trend in the field involves the use of integrative approaches where different types of data are combined into multipartite networks. Every aspect of computer-guided drug repositioning has currently incorporated state-of-the-art machine learning tools to boost their pattern recognition and predictive capabilities. Remarkably, a majority of the recently reported platforms are publicly available as web apps or open-source software. The introduction of nationwide electronic health records provides invaluable real-world data to detect unknown relationships between approved drug treatments and diseases.
引用
收藏
页码:495 / 503
页数:9
相关论文
共 74 条
[1]   Systems Architecture for a Nationwide Healthcare System [J].
Abin, Jorge ;
Nemeth, Horacio ;
Friedmann, Ignacio .
MEDINFO 2015: EHEALTH-ENABLED HEALTH, 2015, 216 :12-16
[2]   Repurposing human PDE4 inhibitors for neglected tropical diseases: Design, synthesis and evaluation of cilomilast analogues as Trypanosoma brucei PDEB1 inhibitors [J].
Amata, Emanuele ;
Bland, Nicholas D. ;
Hoyt, Charles T. ;
Settimo, Luca ;
Campbell, Robert K. ;
Pollastri, Michael P. .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2014, 24 (17) :4084-4089
[3]   Topological network measures for drug repositioning [J].
Badkas, Apurva ;
De Landtsheer, Sebastien ;
Sauter, Thomas .
BRIEFINGS IN BIOINFORMATICS, 2021, 22 (04)
[4]   Application of target repositioning and in silico screening to exploit fatty acid binding proteins (FABPs) fromEchinococcus multilocularisas possible drug targets [J].
Belgamo, Julian A. ;
Alberca, Lucas N. ;
Porfido, Jorge L. ;
Romero, Franco N. Caram ;
Rodriguez, Santiago ;
Talevi, Alan ;
Corsico, Betina ;
Franchini, Gisela R. .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2020, 34 (12) :1275-1288
[5]   Clinical Uses of Botulinum Neurotoxins: Current Indications, Limitations and Future Developments [J].
Chen, Sheng .
TOXINS, 2012, 4 (10) :913-939
[6]   Combating Ebola with Repurposed Therapeutics Using the CANDO Platform [J].
Chopra, Gaurav ;
Kaushik, Sashank ;
Elkin, Peter L. ;
Samudrala, Ram .
MOLECULES, 2016, 21 (12)
[7]   Lessons learned from the fate of AstraZeneca's drug pipeline: a five-dimensional framework [J].
Cook, David ;
Brown, Dearg ;
Alexander, Robert ;
March, Ruth ;
Morgan, Paul ;
Satterthwaite, Gemma ;
Pangalos, Menelas N. .
NATURE REVIEWS DRUG DISCOVERY, 2014, 13 (06) :419-431
[8]   Anti-Inflammatory Small Molecules To Treat Seizures anc Eoileosy: From Bench to Becsice [J].
Dey, Avijit ;
Kang, Xu ;
Qiu, Jiange ;
Du, Yifeng ;
Jiang, Jianxiong .
TRENDS IN PHARMACOLOGICAL SCIENCES, 2016, 37 (06) :463-484
[9]   Innovation in the pharmaceutical industry: New estimates of R&D costs [J].
DiMasi, Joseph A. ;
Grabowski, Henry G. ;
Hansen, Ronald W. .
JOURNAL OF HEALTH ECONOMICS, 2016, 47 :20-33
[10]   Estimating the Similarity between Protein Pockets [J].
Eguida, Merveille ;
Rognan, Didier .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (20)