Small-molecule discovery through DNA-encoded libraries

被引:66
|
作者
Peterson, Alexander A. [1 ,2 ,3 ]
Liu, David R. [1 ,2 ,3 ]
机构
[1] Broad Inst MIT & Harvard, Merkin Inst Transformat Technol Healthcare, Cambridge, MA 02142 USA
[2] Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
[3] Harvard Univ, Howard Hughes Med Inst, Cambridge, MA 02138 USA
关键词
SOLUBLE EPOXIDE HYDROLASE; IN-VITRO SELECTION; CHEMICAL LIBRARY; COMBINATORIAL LIBRARY; KINASE INHIBITOR; DRUG DISCOVERY; IDENTIFICATION; RECEPTOR; DESIGN; LIGANDS;
D O I
10.1038/s41573-023-00713-6
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
DNA-encoded library (DEL) technology is a powerful small-molecule discovery platform, offering many advantages over traditional screening methods. Here, Peterson and Liu provide an in-depth review of recent small molecules discovered through DELs, illustrating the versatility, efficiency and broad impact of this technology. The development of bioactive small molecules as probes or drug candidates requires discovery platforms that enable access to chemical diversity and can quickly reveal new ligands for a target of interest. Within the past 15 years, DNA-encoded library (DEL) technology has matured into a widely used platform for small-molecule discovery, yielding a wide variety of bioactive ligands for many therapeutically relevant targets. DELs offer many advantages compared with traditional screening methods, including efficiency of screening, easily multiplexed targets and library selections, minimized resources needed to evaluate an entire DEL and large library sizes. This Review provides accounts of recently described small molecules discovered from DELs, including their initial identification, optimization and validation of biological properties including suitability for clinical applications.
引用
收藏
页码:699 / 722
页数:24
相关论文
共 50 条
  • [1] Small-molecule discovery from DNA-encoded chemical libraries
    Kleiner, Ralph E.
    Dumelin, Christoph E.
    Liu, David R.
    CHEMICAL SOCIETY REVIEWS, 2011, 40 (12) : 5707 - 5717
  • [2] DNA-Encoded Chemical Libraries: Advancing beyond Conventional Small-Molecule Libraries
    Franzini, Raphael M.
    Neri, Dario
    Scheuermann, Joerg
    ACCOUNTS OF CHEMICAL RESEARCH, 2014, 47 (04) : 1247 - 1255
  • [3] Discovery of Small-Molecule Interleukin-2 Inhibitors from a DNA-Encoded Chemical Library
    Leimbacher, Markus
    Zhang, Yixin
    Mannocci, Luca
    Stravs, Michael
    Geppert, Tim
    Scheuermann, Joerg
    Schneider, Gisbert
    Neri, Dario
    CHEMISTRY-A EUROPEAN JOURNAL, 2012, 18 (25) : 7729 - 7737
  • [4] Design, synthesis and selection of DNA-encoded small-molecule libraries
    Clark, Matthew A.
    Acharya, Raksha A.
    Arico-Muendel, Christopher C.
    Belyanskaya, Svetlana L.
    Benjamin, Dennis R.
    Carlson, Neil R.
    Centrella, Paolo A.
    Chiu, Cynthia H.
    Creaser, Steffen P.
    Cuozzo, John W.
    Davie, Christopher P.
    Ding, Yun
    Franklin, G. Joseph
    Franzen, Kurt D.
    Gefter, Malcolm L.
    Hale, Steven P.
    Hansen, Nils J. V.
    Israel, David I.
    Jiang, Jinwei
    Kavarana, Malcolm J.
    Kelley, Michael S.
    Kollmann, Christopher S.
    Li, Fan
    Lind, Kenneth
    Mataruse, Sibongile
    Medeiros, Patricia F.
    Messer, Jeffrey A.
    Myers, Paul
    O'Keefe, Heather
    Oliff, Matthew C.
    Rise, Cecil E.
    Satz, Alexander L.
    Skinner, Steven R.
    Svendsen, Jennifer L.
    Tang, Lujia
    van Vloten, Kurt
    Wagner, Richard W.
    Yao, Gang
    Zhao, Baoguang
    Morgan, Barry A.
    NATURE CHEMICAL BIOLOGY, 2009, 5 (09) : 647 - 654
  • [5] DNA-encoded libraries - an efficient small molecule discovery technology for the biomedical sciences
    Kunig, Verena
    Potowski, Marco
    Gohla, Anne
    Brunschweiger, Andreas
    BIOLOGICAL CHEMISTRY, 2018, 399 (07) : 691 - 710
  • [6] Fidelity by design: Yoctoreactor and binder trap enrichment for small-molecule DNA-encoded libraries and drug discovery
    Blakskjaer, Peter
    Heitner, Tara
    Hansen, Nils Jakob Vest
    CURRENT OPINION IN CHEMICAL BIOLOGY, 2015, 26 : 62 - 71
  • [7] Future challenges with DNA-encoded chemical libraries in the drug discovery domain
    Zhao, Guixian
    Huang, Yiran
    Zhou, Yu
    Li, Yizhou
    Li, Xiaoyu
    EXPERT OPINION ON DRUG DISCOVERY, 2019, 14 (08) : 735 - 753
  • [8] Drug Discovery with DNA-Encoded Chemical Libraries
    Buller, Fabian
    Mannocci, Luca
    Scheuermann, Joerg
    Nerit, Dario
    BIOCONJUGATE CHEMISTRY, 2010, 21 (09) : 1571 - 1580
  • [9] Recent Advances on the Selection Methods of DNA-Encoded Libraries
    Huang, Yiran
    Li, Xiaoyu
    CHEMBIOCHEM, 2021, 22 (14) : 2384 - 2397
  • [10] Small-Molecule Positive Allosteric Modulators of the β2-Adrenoceptor Isolated from DNA-Encoded Libraries
    Ahn, Seungkirl
    Pani, Biswaranjan
    Kahsai, Alem W.
    Olsen, Eva K.
    Husemoen, Gitte
    Vestergaard, Mikkel
    Jin, Lei
    Zhao, Shuai
    Wingler, Laura M.
    Rambarat, Paula K.
    Simhal, Rishabh K.
    Xu, Thomas T.
    Sun, Lillian D.
    Shim, Paul J.
    Staus, Dean P.
    Huang, Li-Yin
    Franch, Thomas
    Chen, Xin
    Lefkowitz, Robert J.
    MOLECULAR PHARMACOLOGY, 2018, 94 (02) : 850 - 861