Artificial Intelligence for Retrosynthesis Prediction

被引:43
作者
Jiang, Yinjie [1 ]
Yu, Yemin [2 ]
Kong, Ming [1 ]
Mei, Yu [1 ]
Yuan, Luotian [1 ]
Huang, Zhengxing [1 ]
Kuang, Kun [1 ,3 ,4 ]
Wang, Zhihua [3 ,4 ]
Yao, Huaxiu [5 ]
Zou, James [5 ]
Coley, Connor W. [6 ,7 ]
Wei, Ying [2 ]
机构
[1] Zhejiang Univ, Coll Comp Sci & Technol, Hangzhou 310027, Peoples R China
[2] City Univ Hong Kong, Dept Comp Sci, Hong Kong 999077, Peoples R China
[3] Zhejiang Univ, Shanghai Inst Adv Study, Shanghai 201203, Peoples R China
[4] Shanghai Artificial Intelligence Lab, Shanghai 201203, Peoples R China
[5] Stanford Univ, Dept Comp Sci, Stanford, CA 94305 USA
[6] MIT, Dept Chem Engn & Comp Sci, Cambridge, MA 02139 USA
[7] MIT, Artificial Intelligence Lab, Cambridge, MA 02139 USA
来源
ENGINEERING | 2023年 / 25卷
关键词
Retrosynthesis prediction; Artificial intelligence; Graph neural networks; Deep reinforcement learning; ASSISTED SYNTHETIC ANALYSIS; DEEP NEURAL-NETWORKS; ORGANIC-CHEMISTRY; KNOWLEDGE-BASE; COMPUTER; TRANSFORMER; GENERATION; LANGUAGE; CLASSIFICATION; METHODOLOGY;
D O I
10.1016/j.eng.2022.04.021
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
In recent years, there has been a dramatic rise in interest in retrosynthesis prediction with artificial intelligence (AI) techniques. Unlike conventional retrosynthesis prediction performed by chemists and by rule-based expert systems, AI-driven retrosynthesis prediction automatically learns chemistry knowledge from off-the-shelf experimental datasets to predict reactions and retrosynthesis routes. This provides an opportunity to address many conventional challenges, including heavy reliance on extensive expertise, the sub-optimality of routes, and prohibitive computational cost. This review describes the current landscape of AI-driven retrosynthesis prediction. We first discuss formal definitions of the retrosynthesis problem and review the outstanding research challenges therein. We then review the related AI techniques and recent progress that enable retrosynthesis prediction. Moreover, we propose a novel landscape that provides a comprehensive categorization of different retrosynthesis prediction components and survey how AI reshapes each component. We conclude by discussing promising areas for future research. (c) 2022 THE AUTHORS. Published by Elsevier LTD on behalf of Chinese Academy of Engineering and Higher Education Press Limited Company. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
引用
收藏
页码:32 / 50
页数:19
相关论文
共 130 条
[1]  
Akkaya I, 2019, Arxiv, DOI arXiv:1910.07113
[2]   PROOF-NUMBER SEARCH [J].
ALLIS, LV ;
VANDERMEULEN, M ;
VANDENHERIK, HJ .
ARTIFICIAL INTELLIGENCE, 1994, 66 (01) :91-124
[3]  
[Anonymous], 1973, Computers in Chemistry, DOI DOI 10.1007/BFB0051317
[4]  
[Anonymous], 2017, Electron. Imaging, DOI 10.2352/
[5]  
[Anonymous], 2022, NextMove Software
[6]  
Atwood J, 2016, ADV NEUR IN, V29
[7]   RetroTransformDB: A Dataset of Generic Transforms for Retrosynthetic Analysis [J].
Avramova, Svetlana ;
Kochev, Nikolay ;
Angelov, Plamen .
DATA, 2018, 3 (02)
[8]  
Bahdanau D, 2016, Arxiv, DOI [arXiv:1409.0473, 10.48550/arXiv.1409.0473,1409.0473, DOI 10.48550/ARXIV.1409.0473,1409.0473]
[9]   Artificial applicability labels for improving policies in retrosynthesis prediction [J].
Bjerrum, Esben Jannik ;
Thakkar, Amol ;
Engkvist, Ola .
MACHINE LEARNING-SCIENCE AND TECHNOLOGY, 2021, 2 (01)
[10]  
Bollacker KD., 2008, P ACM SIGMOD INT C M, P1247, DOI DOI 10.1145/1376616.1376746