Replication of the bSTAR sequence and open-source implementation

被引:1
作者
Lee, Nam G. [1 ,2 ]
Bauman, Grzegorz [3 ,4 ]
Bieri, Oliver [3 ,4 ]
Nayak, Krishna S. [1 ,2 ]
机构
[1] Univ Southern Calif, Alfred E Mann Dept Biomed Engn, Los Angeles, CA 90089 USA
[2] Univ Southern Calif, Ming Hsieh Dept Elect & Comp Engn, Los Angeles, CA 90007 USA
[3] Univ Basel Hosp, Div Radiol Phys, Dept Radiol, Basel, Switzerland
[4] Univ Basel, Dept Biomed Engn, Allschwil, Switzerland
基金
美国国家科学基金会;
关键词
lung MRI; open-source; replication; reproducible research; SHRINKAGE-THRESHOLDING ALGORITHM; SIMULATIONS; QUALITY; STATE;
D O I
10.1002/mrm.29947
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Purpose: The reproducibility of scientific reports is crucial to advancing human knowledge. This paper is a summary of our experience in replicating a balanced SSFP half-radial dual-echo imaging technique (bSTAR) using open-source frameworks as a response to the 2023 ISMRM "repeat it with me" Challenge. Methods: We replicated the bSTAR technique for thoracic imaging at 0.55T. The bSTAR pulse sequence is implemented in Pulseq, a vendor neutral open-source rapid sequence prototyping environment. Image reconstruction is performed with the open-source Berkeley Advanced Reconstruction Toolbox (BART). The replication of bSTAR, termed open-source bSTAR, is tested by replicating several figures from the published literature. Original bSTAR, using the pulse sequence and image reconstruction developed by the original authors, and open-source bSTAR, with pulse sequence and image reconstruction developed in this work, were performed in healthy volunteers. Results: Both echo images obtained from open-source bSTAR contain no visible artifacts and show identical spatial resolution and image quality to those in the published literature. A direct head-to-head comparison between open-source bSTAR and original bSTAR on a healthy volunteer indicates that open-source bSTAR provides adequate SNR, spatial resolution, level of artifacts, and conspicuity of pulmonary vessels comparable to original bSTAR. Conclusion: We have successfully replicated bSTAR lung imaging at 0.55T using two open-source frameworks. Full replication of a research method solely relying on information on a research paper is unfortunately rare in research, but our success gives greater confidence that a research methodology can be indeed replicated as described.
引用
收藏
页码:1464 / 1477
页数:14
相关论文
共 32 条
[1]  
[Anonymous], ISMRM/mri_unbound: Code from the mri_unbound website
[2]   Submillimeter lung MRI at 0.55 T using balanced steady-state free precession with half-radial dual-echo readout (bSTAR) [J].
Bauman, Grzegorz ;
Lee, Nam G. G. ;
Tian, Ye ;
Bieri, Oliver ;
Nayak, Krishna S. .
MAGNETIC RESONANCE IN MEDICINE, 2023, :1949-1957
[3]   Balanced steady-state free precession thoracic imaging with half-radial dual-echo readout on smoothly interleaved archimedean spirals [J].
Bauman, Grzegorz ;
Bieri, Oliver .
MAGNETIC RESONANCE IN MEDICINE, 2020, 84 (01) :237-246
[4]   A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems [J].
Beck, Amir ;
Teboulle, Marc .
SIAM JOURNAL ON IMAGING SCIENCES, 2009, 2 (01) :183-202
[5]   SpinDynamica: Symbolic and numerical magnetic resonance in a Mathematica environment [J].
Bengs, Christian ;
Levitt, Malcolm H. .
MAGNETIC RESONANCE IN CHEMISTRY, 2018, 56 (06) :374-414
[6]   Concomitant gradient terms in phase contrast MR: Analysis and correction [J].
Bernstein, MA ;
Zhou, XHJ ;
Polzin, JA ;
King, KF ;
Ganin, A ;
Pelc, NJ ;
Glover, GH .
MAGNETIC RESONANCE IN MEDICINE, 1998, 39 (02) :300-308
[7]  
Bieri O, 2023, Z MED PHYS, V33, P220, DOI 10.1016/j.zemedi.2022.01.003
[8]   Rapid measurement and correction of phase errors from B0 eddy currents: Impact on image quality for non-cartesian imaging [J].
Brodsky, Ethan K. ;
Klaers, Jessica L. ;
Samsonov, Alexey A. ;
Kijowski, Richard ;
Block, Walter F. .
MAGNETIC RESONANCE IN MEDICINE, 2013, 69 (02) :509-515
[9]   Large-scale magnetic resonance simulations: A tutorial [J].
Concilio, Maria Grazia .
MAGNETIC RESONANCE IN CHEMISTRY, 2020, 58 (08) :691-717
[10]  
Deiming M., 1994, Magnetization prepared true FISP imaging