LncRNAs: the good, the bad, and the unknown

被引:12
作者
Arunkumar, Ganesan [1 ]
机构
[1] Univ New Mexico, Sch Med, Dept Cell Biol & Physiol, LncRNA Epigenet & Genome Org Lab, Albuquerque, NM 87131 USA
关键词
LncRNAs; non-coding RNAs; epigenetics; genome organization; LONG-NONCODING RNA; X-CHROMOSOME INACTIVATION; GENE-EXPRESSION; CENP-A; CENTROMERIC DNA; NUCLEAR LAMINA; CANCER-CELLS; TUMOR-GROWTH; STEM-CELLS; XIST RNA;
D O I
10.1139/bcb-2023-0155
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Long non-coding RNAs (lncRNAs) are significant contributors in maintaining genomic integrity through epigenetic regulation. LncRNAs can interact with chromatin-modifying complexes in both cis and trans pathways, drawing them to specific genomic loci and influencing gene expression via DNA methylation, histone modifications, and chromatin remodeling. They can also operate as building blocks to assemble different chromatin-modifying components, facilitating their interactions and gene regulatory functions. Deregulation of these molecules has been associated with various human diseases, including cancer, cardiovascular disease, and neurological disorders. Thus, lncRNAs are implicated as potential diagnostic indicators and therapeutic targets. This review discusses the current understanding of how lncRNAs mediate epigenetic control, genomic integrity, and their putative functions in disease pathogenesis.
引用
收藏
页码:9 / 27
页数:19
相关论文
共 206 条
[1]   Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1 [J].
Abdelmohsen, Kotb ;
Panda, Amaresh C. ;
Munk, Rachel ;
Grammatikakis, Ioannis ;
Dudekula, Dawood B. ;
De, Supriyo ;
Kim, Jiyoung ;
Noh, Ji Heon ;
Kim, Kyoung Mi ;
Martindale, Jennifer L. ;
Gorospe, Myriam .
RNA BIOLOGY, 2017, 14 (03) :361-369
[2]   Programmed ribosomal frameshifting: Much ado about knotting! [J].
Alam, SL ;
Atkins, JF ;
Gesteland, RF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (25) :14177-14179
[3]   Long Noncoding RNA TARID Directs Demethylation and Activation of the Tumor Suppressor TCF21 via GADD45A [J].
Arab, Khelifa ;
Park, Yoon Jung ;
Lindroth, Anders M. ;
Schaefer, Andrea ;
Oakes, Christopher ;
Weichenhan, Dieter ;
Lukanova, Annekatrin ;
Lundin, Eva ;
Risch, Angela ;
Meister, Michael ;
Dienemann, Hendrik ;
Dyckhoff, Gerhard ;
Herold-Mende, Christel ;
Grummt, Ingrid ;
Niehrs, Christof ;
Plass, Christoph .
MOLECULAR CELL, 2014, 55 (04) :604-614
[4]   Acetylation of Cytidine in mRNA Promotes Translation Efficiency [J].
Arango, Daniel ;
Sturgill, David ;
Alhusaini, Najwa ;
Dillman, Allissa A. ;
Sweet, Thomas J. ;
Hanson, Gavin ;
Hosogane, Masaki ;
Sinclair, Wilson R. ;
Nanan, Kyster K. ;
Mandler, Mariana D. ;
Fox, Stephen D. ;
Zengeya, Thomas T. ;
Andresson, Thorkell ;
Meier, Jordan L. ;
Coller, Jeffery ;
Oberdoerffer, Shalini .
CELL, 2018, 175 (07) :1872-+
[5]   R-Loop Mediated trans Action of the APOLO Long Noncoding RNA [J].
Ariel, Federico ;
Lucero, Leandro ;
Christ, Aurelie ;
Mammarella, Maria Florencia ;
Jegu, Teddy ;
Veluchamy, Alaguraj ;
Mariappan, Kiruthiga ;
Latrasse, David ;
Blein, Thomas ;
Liu, Chang ;
Benhamed, Moussa ;
Crespi, Martin .
MOLECULAR CELL, 2020, 77 (05) :1055-+
[6]   Oncogenic lncRNAs alter epigenetic memory at a fragile chromosomal site in human cancer cells [J].
Arunkumar, Ganesan ;
Baek, Songjoon ;
Sturgill, David ;
Bui, Minh ;
Dalal, Yamini .
SCIENCE ADVANCES, 2022, 8 (09)
[7]   Centromeric Transcription: A Conserved Swiss-Army Knife [J].
Arunkumar, Ganesan ;
Melters, Daniel P. .
GENES, 2020, 11 (08) :1-23
[8]   LncRNA OIP5-AS1 is overexpressed in undifferentiated oral tumors and integrated analysis identifies as a downstream effector of stemness-associated transcription factors [J].
Arunkumar, Ganesan ;
Anand, Shankar ;
Raksha, Partha ;
Dhamodharan, Shankar ;
Rao, Harikrishnan Prasanna Srinivasa ;
Subbiah, Shanmugam ;
Murugan, Avaniyapuram Kannan ;
Munirajan, Arasambattu Kannan .
SCIENTIFIC REPORTS, 2018, 8
[9]   Expression profiling of long non-coding RNA identifies linc-RoR as a prognostic biomarker in oral cancer [J].
Arunkumar, Ganesan ;
Rao, Arunagiri Kuha Deva Magendhra ;
Manikandan, Mayakannan ;
Arun, Kanagaraj ;
Vinothkumar, Vilvanathan ;
Revathidevi, Sundaramoorthy ;
Rajkumar, Kottayasamy Seenivasagam ;
Rajaraman, Ramamurthy ;
Munirajan, Arasambattu Kannan .
TUMOR BIOLOGY, 2017, 39 (04)
[10]   CRISPR/Cas9-mediated LINC00511 knockout strategies, increased apoptosis of breast cancer cells via suppressing antiapoptotic genes [J].
Azadbakht, Narjes ;
Doosti, Abbas ;
Jami, Mohammad-Saeid .
BIOLOGICAL PROCEDURES ONLINE, 2022, 24 (01)