Screening ANLN and ASPM as bladder urothelial carcinoma-related biomarkers based on weighted gene co-expression network analysis

被引:4
作者
Yang, Tenghao [1 ]
Chi, Zepai [1 ]
Liu, Guoyuan [1 ]
Hong, Xuwei [1 ]
Cao, Sizhe [1 ]
Cheng, Kequan [1 ]
Zhang, Yonghai [1 ]
机构
[1] Shantou Cent Hosp, Dept Urol, Shantou, Peoples R China
关键词
ANLN; ASPM; bladder urothelial carcinoma; weighted gene co-expression network analysis; WGCNA; PREDICTING RECURRENCE; RADICAL CYSTECTOMY; CANCER; PROGRESSION; PROTEIN; ACTIN; SURVIVAL; ANILLIN; RISK; ENCODES;
D O I
10.3389/fgene.2023.1107625
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Introduction: Bladder cancer (BLCA) is one of the most common malignancies in the urinary system with a poor prognosis and high treatment costs. Identifying potential prognostic biomarkers is significant for exploring new therapeutic and predictive targets of BLCA.Methods: In this study, we screened differentially expressed genes using the GSE37815 dataset. We then performed a weighted gene co-expression network analysis (WGCNA) to identify the genes correlated with the histologic grade and T stage of BLCA using the GSE32548 dataset. Subsequently, Kaplan Meier survival analysis and Cox regression were used to further identify prognosis-related hub genes using the datasets GSE13507 and TCGA-BLCA. Moreover, we detected the expression of the hub genes in 35 paired samples, including BLCA and paracancerous tissue, from the Shantou Central Hospital by qRT-polymerase chain reaction.Results: This study showed that Anillin (ANLN) and Abnormal spindle-like microcephaly-associated gene (ASPM) were prognostic biomarkers for BLCA. High expression of ANLN and ASPM was associated with poor overall survival.The qRT-PCR results revealed that ANLN and ASPM genes were upregulated in BLCA, and there was a correlation between the expression of ANLN and ASPM in cancer tissues and paracancerous tissue. Additionally, the increasing multiples in the ANLN gene was obvious in high-grade BLCA.Discussion: In summary, this preliminary exploration indicated a correlation between ANLN and ASPM expression. These two genes, serving as the risk factors for BLCA progression, might be promising targets to improve the occurrence and progression of BLCA.
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页数:13
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共 54 条
[1]   Microtubule minus-end regulation at a glance [J].
Akhmanova, Anna ;
Steinmetz, Michel O. .
JOURNAL OF CELL SCIENCE, 2019, 132 (11)
[2]   Microtubules and actin crosstalk in cell migration and division [J].
Akhshi, Tara Kafiyeh ;
Wernike, Denise ;
Piekny, Alisa .
CYTOSKELETON, 2014, 71 (01) :1-23
[3]   European Association of Urology Guidelines on Non-muscle-invasive Bladder Cancer (TaT1 and Carcinoma In Situ)-2019 Update [J].
Babjuk, Marko ;
Burger, Maximilian ;
Comperat, Eva M. ;
Gontero, Paolo ;
Mostafid, A. Hugh ;
Palou, Joan ;
van Rhijn, Bas W. G. ;
Roupret, Morgan ;
Shariat, Shahrokh F. ;
Sylvester, Richard ;
Zigeuner, Richard ;
Capoun, Otakar ;
Cohen, Daniel ;
Dominguez Escrig, Jose Luis ;
Hernandez, Virginia ;
Peyronnet, Benoit ;
Seisen, Thomas ;
Soukup, Viktor .
EUROPEAN UROLOGY, 2019, 76 (05) :639-657
[4]   Protein-truncating mutations in ASPM cause variable reduction in brain size [J].
Bond, J ;
Scott, S ;
Hampshire, DJ ;
Springell, K ;
Corry, P ;
Abramowicz, MJ ;
Mochida, GH ;
Hennekam, RCM ;
Maher, ER ;
Fryns, JP ;
Alswaid, A ;
Jafri, H ;
Rashid, Y ;
Mubaidin, A ;
Walsh, CA ;
Roberts, E ;
Woods, CG .
AMERICAN JOURNAL OF HUMAN GENETICS, 2003, 73 (05) :1170-1177
[5]   ASPM is a major determinant of cerebral cortical size [J].
Bond, J ;
Roberts, E ;
Mochida, GH ;
Hampshire, DJ ;
Scott, S ;
Askham, JM ;
Springell, K ;
Mahadevan, M ;
Crow, YJ ;
Markham, AF ;
Walsh, CA ;
Woods, CG .
NATURE GENETICS, 2002, 32 (02) :316-320
[6]   EORTC Nomograms and Risk Groups for Predicting Recurrence, Progression, and Disease-specific and Overall Survival in Non-Muscle-invasive Stage Ta-T1 Urothelial Bladder Cancer Patients Treated with 1-3 Years of Maintenance Bacillus Calmette-Guerin [J].
Cambier, Samantha ;
Sylvester, Richard J. ;
Collette, Laurence ;
Gontero, Paolo ;
Brausi, Maurizio A. ;
van Andel, George ;
Kirkels, Wim J. ;
Da Silva, Fernando Calais ;
Oosterlinck, Willem ;
Prescott, Stephen ;
Kirkali, Ziya ;
Powell, Philip H. ;
de Reijke, Theo M. ;
Turkeri, Levent ;
Collette, Sandra ;
Oddens, Jorg .
EUROPEAN UROLOGY, 2016, 69 (01) :60-69
[7]   Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks [J].
Carlson, MRJ ;
Zhang, B ;
Fang, ZX ;
Mischel, PS ;
Horvath, S ;
Nelson, SF .
BMC GENOMICS, 2006, 7 (1)
[8]   Bioinformatics Analysis Identified Key Molecular Changes in Bladder Cancer Development and Recurrence [J].
Chen, Qingke ;
Hu, Jieping ;
Deng, Jun ;
Fu, Bin ;
Guo, Ju .
BIOMED RESEARCH INTERNATIONAL, 2019, 2019
[9]   ANLN Serves as an Oncogene in Bladder Urothelial Carcinoma via Activating JNK Signaling Pathway [J].
Chen, Sheng ;
Gao, Yi ;
Chen, Fei ;
Wang, Tian-Bao .
UROLOGIA INTERNATIONALIS, 2023, 107 (03) :310-320
[10]   ANILLIN, A CONTRACTILE RING PROTEIN THAT CYCLES FROM THE NUCLEUS TO THE CELL CORTEX [J].
FIELD, CM ;
ALBERTS, BM .
JOURNAL OF CELL BIOLOGY, 1995, 131 (01) :165-178