Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole-genome sequencing

被引:1
作者
Hernandez-Alonso, German [1 ,2 ]
Ramos-Madrigal, Jazmin [1 ,2 ]
Sun, Xin [1 ,2 ]
Scharff-Olsen, Camilla Hjorth [1 ]
Sinding, Mikkel-Holger S. [3 ]
Martins, Nuno F. F. [1 ,2 ]
Ciucani, Marta Maria [1 ]
Mak, Sarah S. T. [1 ,2 ]
Lanigan, Liam Thomas [1 ]
Clausen, Cecilie G. G. [1 ]
Bhak, Jong [4 ,5 ,6 ,7 ]
Jeon, Sungwon [4 ,5 ]
Kim, Changjae [4 ]
Eo, Kyung Yeon [8 ]
Cho, Seong-Ho [9 ]
Boldgiv, Bazartseren [10 ]
Gantulga, Gankhuyag [11 ]
Unudbayasgalan, Zunduibaatar [11 ]
Kosintsev, Pavel A. A. [12 ,13 ]
Stenoien, Hans K. K. [14 ]
Gilbert, M. Thomas P. [1 ,2 ,15 ]
Gopalakrishnan, Shyam [1 ,2 ,16 ]
机构
[1] Univ Copenhagen, Globe Inst, Sect Hologen, Copenhagen, Denmark
[2] Univ Copenhagen, Globe Inst, Ctr Evolutionary Hologen, Copenhagen, Denmark
[3] Univ Copenhagen, Dept Biol, Copenhagen, Denmark
[4] Clinomics Inc, Ulsan, South Korea
[5] Ulsan Natl Inst Sci & Technol, Korean Genom Ctr, Ulsan, South Korea
[6] Ulsan Natl Inst Sci & Technol, Coll Informat Bio Convergence Engn, Dept Biomed Engn, Ulsan, South Korea
[7] Genome Res Fdn, Personal Genom Inst, Cheongju, South Korea
[8] Semyung Univ, Dept Anim Hlth & Welf, Jecheon, South Korea
[9] Kyungpook Natl Univ, Nat Hist Museum, Gunwi, South Korea
[10] Natl Univ Mongolia, Lab Ecol & Evolutionary Synth, Ulaanbaatar, Mongolia
[11] Mongolian Acad Sci, Inst Biol, Ulaanbaatar, Mongolia
[12] Russian Acad Sci, Inst Plant & Anim Ecol, Urals Branch, Ekaterinburg, Russia
[13] Ural Fed Univ, Ekaterinburg, Russia
[14] NTNU Univ Museum, Norwegian Univ Sci & Technol, Trondheim, Norway
[15] Univ Museum, Norwegian Univ Sci & Technol, Trondheim, Norway
[16] Tech Univ Denmark, Dept Hlth Technol, Bioinformat, Lyngby, Denmark
来源
ECOLOGY AND EVOLUTION | 2023年 / 13卷 / 08期
关键词
Canis lupus; population genomics; taxonomic ambiguity; wolf conservation genetics; wolf population structure; LIBRARY PREPARATION; ANCIENT; WOLVES; DOGS; ADMIXTURE; PATTERNS; HISTORY;
D O I
10.1002/ece3.10404
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
The taxonomic status of the now likely extirpated Korean Peninsula wolf has been extensively debated, with some arguing it represents an independent wolf lineage, Canis coreanus. To investigate the Korean wolf's genetic affiliations and taxonomic status, we sequenced and analysed the genomes of a Korean wolf dated to the beginning of the 20th century, and a captive wolf originally from the Pyongyang Central Zoo. Our results indicated that the Korean wolf bears similar genetic ancestry to other regional East Asian populations, therefore suggesting it is not a distinct taxonomic lineage. We identified regional patterns of wolf population structure and admixture in East Asia with potential conservation consequences in the Korean Peninsula and on a regional scale. We find that the Korean wolf has similar genomic diversity and inbreeding to other East Asian wolves. Finally, we show that, in contrast to the historical sample, the captive wolf is genetically more similar to wolves from the Tibetan Plateau; hence, Korean wolf conservation programmes might not benefit from the inclusion of this specimen.
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页数:15
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